RchiOBHm_Chr2g0153901

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
71144317 .. 71145212
896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52296

Sequence Viewer

Length: 321 bp
ATGCTGTTGAGGGTATATTGGTCCTCCAGCAGCACGAATAAAATTGCAGAGCATTTTCCAGCACCAGAAGAGTTTGATCCGAGCAGGTTTGGGAATGGAAAGGCCGCTCCAGCTTACTCAAATATCCCATTCGGAAGCGGTCCTCGAATCTGTCCAGGAAAAGAATATGCTCGACTTCAACTTATGTGTTTCCTCCATCACGTCGTTACAAGATACAAATGGGAAGTGACAAATACAAAGGCCAAAATTGCAGGCGGTTTGAATCCTGTTCCAAAAGAAGGGTTTCACATTCGCATCCAACCTTACAATAAGTTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.95

Weight (kDa)

9.7

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 80 3.9e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 3 cut(s) 105, 138, 255
AclWI GGATC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 179, 262
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 1 cut(s) 71
AoxI GGCC 3 cut(s) 102, 240, 315
ApeKI GCWGC 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 21, 140
AvaII GGWCC 2 cut(s) 21, 140
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 2 cut(s) 31, 105
BlsI GCNGC 2 cut(s) 32, 106
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 2 cut(s) 21, 140
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 21, 140
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 2 cut(s) 10, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 104, 242, 317
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 3 cut(s) 104, 242, 317
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 105, 138, 255
BspANI GGCC 3 cut(s) 104, 242, 317
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 107
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 110, 248
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 3 cut(s) 104, 242, 317
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 21, 140
CviJI RGCY 4 cut(s) 104, 113, 242, 317
CviKI_1 RGCY 4 cut(s) 104, 113, 242, 317
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 21, 140
EcoRII CCWGG 1 cut(s) 154
FaiI YATR 3 cut(s) 16, 168, 185
Fnu4HI GCNGC 2 cut(s) 31, 105
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 31, 105
GluI GCNGC 2 cut(s) 31, 105
GsuI CTGGAG 2 cut(s) 10, 93
HaeIII GGCC 3 cut(s) 104, 242, 317
HinfI GANTC 2 cut(s) 147, 262
Hpy188I TCNGA 2 cut(s) 81, 134
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 47, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 248
HpySE526I ACGT 1 cut(s) 201
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 40, 70, 72, 78, 123, 141, 168, 237, 279
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 205, 226
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 107
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 80
MluCI AATT 2 cut(s) 42, 246
MnlI CCTC 4 cut(s) 3, 34, 153, 203
MroXI GAANNNNTTC 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 110, 248
NdeII GATC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 147, 262
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 2 cut(s) 32, 106
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 2 cut(s) 21, 140
SatI GCNGC 2 cut(s) 31, 105
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 21, 140
ScrFI CCNGG 1 cut(s) 156
SetI ASST 4 cut(s) 89, 115, 204, 304
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 2 cut(s) 21, 140
Sse9I AATT 2 cut(s) 42, 246
SsiI CCGC 3 cut(s) 105, 138, 255
StyD4I CCNGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 145, 172
TasI AATT 2 cut(s) 42, 246
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 147, 262
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 21, 140
XmnI GAANNNNTTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.