Rw4G028240

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
54906142 .. 54906657
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G028240.1

Sequence Viewer

Length: 420 bp
ATGAAATATTCTTGGGGTGTTGCACTTGAAGTTATGAGGCTGGTGCCACCTCTTCAAGGAACATTTAGAGAGGTCATTACCGACTTCACCTACGAAGGTTATACAATTCCAAAAGGGTGGAAGGTGTATTGGTCGGCTAGCAGCACAAATAAAGTCTCCGAGTATTTTCCAGCACCAGAAAAGTTCGATCCAACCAGGTTCGAGAATGGAAAAGCTCCCCCTGCTTACTCGAACATCCCATTTGGAAGCGGACCTCGAATTTGTCCAGGAAAAGAATATGCTCGTATGCAACTCCTGTGTTCGCTTCATCACATTGTGACCAAATACAAATGGGAAGTGATAAATCCAAACGCTAAGATCGCAAGTGGTATGAATCCCGTTCCCGAAGAAGGCATTCACATTCGTCTCCAACCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

9.06

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 117 6.1e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 316
AfiI CCNNNNNNNGG 2 cut(s) 56, 389
AgsI TTSAA 2 cut(s) 29, 56
AjnI CCWGG 2 cut(s) 194, 265
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 160, 410
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 137
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 196, 267
BcoDI GTCTC 2 cut(s) 160, 410
BfaI CTAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 196, 267
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 196, 267
BmtI GCTAGC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 389
BseBI CCWGG 2 cut(s) 196, 267
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 56, 389
BseXI GCAGC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 56, 389
BsmAI GTCTC 2 cut(s) 160, 410
BsmBI CGTCTC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 187, 357
BspACI CCGC 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 45
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 43
BssMI GATC 2 cut(s) 187, 357
Bst2UI CCWGG 2 cut(s) 196, 267
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 354
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 2 cut(s) 190, 360
BstMAI GTCTC 2 cut(s) 160, 410
BstMBI GATC 2 cut(s) 187, 357
BstMWI GCNNNNNNNGC 2 cut(s) 221, 359
BstNI CCWGG 2 cut(s) 196, 267
BstSCI CCNGG 2 cut(s) 194, 265
BstV1I GCAGC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 194
CviJI RGCY 3 cut(s) 40, 137, 215
CviKI_1 RGCY 3 cut(s) 40, 137, 215
DdeI CTNAG 1 cut(s) 354
DpnI GATC 2 cut(s) 189, 359
DpnII GATC 2 cut(s) 187, 357
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 194, 265
Esp3I CGTCTC 1 cut(s) 410
FaiI YATR 5 cut(s) 35, 102, 279, 287, 371
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 142
HinfI GANTC 1 cut(s) 373
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 202, 383
HpyAV CCTTC 3 cut(s) 89, 115, 383
HpyCH4V TGCA 2 cut(s) 23, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 359
HpyF3I CTNAG 1 cut(s) 354
Kzo9I GATC 2 cut(s) 187, 357
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 26, 181, 183, 189, 208, 234, 252, 279, 308
Lsp1109I GCAGC 1 cut(s) 153
MabI ACCWGGT 1 cut(s) 194
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 189, 359
MboI GATC 2 cut(s) 187, 357
MboII GAAGA 2 cut(s) 44, 398
MluCI AATT 2 cut(s) 105, 258
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 4 cut(s) 30, 60, 64, 264
MroXI GAANNNNTTC 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 196, 267
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 2 cut(s) 196, 267
MwoI GCNNNNNNNGC 2 cut(s) 221, 359
NdeII GATC 2 cut(s) 187, 357
NheI GCTAGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 316
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 373
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 194, 265
PspGI CCWGG 2 cut(s) 194, 265
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 251
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 187, 357
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 196, 267
SetI ASST 9 cut(s) 52, 75, 92, 100, 126, 200, 217, 256, 415
SexAI ACCWGGT 1 cut(s) 194
SinI GGWCC 1 cut(s) 251
Sse9I AATT 2 cut(s) 105, 258
SsiI CCGC 1 cut(s) 249
SspI AATATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 194, 265
TaqI TCGA 4 cut(s) 186, 201, 230, 256
TasI AATT 2 cut(s) 105, 258
TfiI GAWTC 1 cut(s) 373
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 17, 296, 386
VpaK11BI GGWCC 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.