Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

330873 .. 331604

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGTACTCATGGAACGTGGCACAGGAAGTGTTGAGTGTGGCACCACCACTTCAAGGAGCTTTTAGGGAAGCGTTGCAAGACTTCGTCTTCAATGGCTTCACCATCCCTAAAGGCTGGAAATTGTATTGGAGCGCAAACTCGACCCACAAGAGTGCGGCTTACTTCCCCGAACCCCAGAAGTTCGACCCTACAAGATTCGAAGGAAACGGACCTGCCCCATACACGTTTGTTCCCTTTGGAGGAGGCCCGAGAATGTGCCCCAGAAAAGAGTACGCCCGATTGGAAATTCTTGTTTTCATGCATAACCTAGTCAAGAGGTTCAAGTGGGAGGCGATTATTCCCGATGAGAAGATCGTGGTCGACCCGTTGCCCATGCCCGCCAAGGGACTTCCCATCCGCCTTTTCCCTCACAAAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

141

Amino Acids

16.15

Weight (kDa)

9.64

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 113	2e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	3 cut(s)	158, 381, 400
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	2 cut(s)	8, 275
AfiI	CCNNNNNNNGG	3 cut(s)	56, 242, 386
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	56, 94, 325
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	212, 248
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	82
BccI	CCATC	2 cut(s)	113, 404
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	212, 248
BmiI	GGNNCC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 242, 386
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	105, 396
BseLI	CCNNNNNNNGG	3 cut(s)	56, 242, 386
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	3 cut(s)	56, 242, 386
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	3 cut(s)	158, 381, 400
BspANI	GGCC	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	201
BspT107I	GGYRCC	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	105, 396
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	105, 396
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	212, 248
Csp6I	GTAC	2 cut(s)	7, 274
CviAII	CATG	3 cut(s)	12, 301, 376
CviJI	RGCY	6 cut(s)	62, 99, 117, 161, 249, 422
CviKI_1	RGCY	6 cut(s)	62, 99, 117, 161, 249, 422
CviQI	GTAC	2 cut(s)	7, 274
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	15, 304, 379
FaiI	YATR	5 cut(s)	13, 223, 302, 306, 377
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	3 cut(s)	11, 300, 375
FauI	CCCGC	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	92, 383
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	15, 304, 379
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188III	TCNNGA	2 cut(s)	316, 344
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	18, 227
HpyCH4V	TGCA	2 cut(s)	79, 304
HpySE526I	ACGT	2 cut(s)	18, 227
Hsp92II	CATG	3 cut(s)	15, 304, 379
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	59, 132
LpnPI	CCDG	5 cut(s)	11, 103, 191, 228, 277
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	18, 227
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	82, 364
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	2 cut(s)	122, 288
MnlI	CCTC	5 cut(s)	236, 239, 312, 325, 420
Mph1103I	ATGCAT	1 cut(s)	306
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	153
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	3 cut(s)	15, 304, 379
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	212, 248
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	8, 275
RsaNI	GTAC	2 cut(s)	7, 274
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	2 cut(s)	212, 248
ScaI	AGTACT	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	21, 64, 217, 230, 312, 323
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	122, 288
SsiI	CCGC	3 cut(s)	158, 381, 400
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	2 cut(s)	21, 230
TaqI	TCGA	4 cut(s)	143, 186, 201, 363
TasI	AATT	2 cut(s)	122, 288
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	17, 289
TspGWI	ACGGA	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.