Rmu_sc0004135.1_g000012

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004135.1
Physical Location & Seq
Forward (+)
66607 .. 67074
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004135.1_g000012.1.cds

Sequence Viewer

Length: 468 bp
atggtgatggagcaatattattatttccatcccatcaccctcctctttgtctttgtttcctttctggcaatctctctcttggtgctcttcaacaggcacagatcccagttcaccggcaacaacctcccgccgggtaacgtgggctacccggtgatcggagagagctacgagttcgtctcttcagccctgaaaggccaccccgagaagttcatcttagaccgggtgaacaagcactcctcccaagtcttcaagacctctttgattggggagagagctgccttcttctgcggcaccgcttgcaacaagttcttgttctccaatgagaaaaagcttgtccaagtctggttttcgagctctgtcaacaagatcttccgttcttccaccgaaacatctgccgcagaggacgccaacaagacgagaaagatgctacacaacttcttgaagctcaacgctctgcaacgatactga

Protein Analysis

155

Amino Acids

17.79

Weight (kDa)

9.66

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 4 cut(s) 128, 288, 294, 396
AclWI GGATC 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 130, 155
AgsI TTSAA 3 cut(s) 91, 250, 442
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 5 cut(s) 165, 275, 331, 354, 445
AluI AGCT 5 cut(s) 165, 275, 331, 354, 445
Alw21I GWGCWC 2 cut(s) 87, 356
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 275
AsuC2I CCSGG 3 cut(s) 132, 149, 221
AsuHPI GGTGA 5 cut(s) 16, 28, 103, 163, 235
AvaI CYCGRG 1 cut(s) 200
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 87, 356
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 36, 41
BcgI CGANNNNNNTGC 4 cut(s) 374, 406, 408, 440
BcnI CCSGG 3 cut(s) 132, 149, 221
BcoDI GTCTC 1 cut(s) 181
BglII AGATCT 1 cut(s) 366
BisI GCNGC 3 cut(s) 276, 289, 396
BlsI GCNGC 3 cut(s) 277, 290, 397
Bme1390I CCNGG 3 cut(s) 132, 149, 221
BmeT110I CYCGRG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 3 cut(s) 132, 149, 221
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuMI CCSGG 3 cut(s) 132, 149, 221
BsaHI GRCGYC 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 155
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 130, 155
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 32, 226
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 87, 356
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 4 cut(s) 114, 131, 149, 220
BslI CCNNNNNNNGG 2 cut(s) 130, 155
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 87, 356
Bsp143I GATC 3 cut(s) 101, 153, 366
BspACI CCGC 4 cut(s) 128, 288, 294, 396
BspANI GGCC 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 3 cut(s) 101, 153, 366
BssNI GRCGYC 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 92, 184
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 3 cut(s) 104, 156, 369
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 101, 153, 366
BstMWI GCNNNNNNNGC 2 cut(s) 297, 404
BstSCI CCNGG 3 cut(s) 130, 147, 219
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 101, 366
BstYI RGATCY 2 cut(s) 101, 366
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 413
CviJI RGCY 8 cut(s) 144, 165, 185, 195, 275, 331, 354, 445
CviKI_1 RGCY 8 cut(s) 144, 165, 185, 195, 275, 331, 354, 445
DdeI CTNAG 1 cut(s) 214
DpnI GATC 3 cut(s) 103, 155, 368
DpnII GATC 3 cut(s) 101, 153, 366
Eam1104I CTCTTC 2 cut(s) 92, 184
EarI CTCTTC 2 cut(s) 92, 184
Ecl136II GAGCTC 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 181
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 276, 289, 396
FokI GGATG 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 276, 289, 396
GluI GCNGC 3 cut(s) 276, 289, 396
HaeIII GGCC 1 cut(s) 195
HapII CCGG 4 cut(s) 114, 131, 149, 220
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 405
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 329
HpaII CCGG 4 cut(s) 114, 131, 149, 220
HphI GGTGA 5 cut(s) 16, 28, 103, 163, 235
Hpy166II GTNNAC 3 cut(s) 111, 226, 361
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 250, 439
Hpy8I GTNNAC 3 cut(s) 111, 226, 361
HpyAV CCTTC 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 300, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 404
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 101, 153, 366
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 50, 79, 119, 127, 144, 162, 200, 233, 328
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 414
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 103, 155, 368
MboI GATC 3 cut(s) 101, 153, 366
MboII GAAGA 6 cut(s) 79, 171, 238, 274, 361, 369
MflI RGATCY 2 cut(s) 101, 366
MhlI GDGCHC 2 cut(s) 87, 356
MnlI CCTC 6 cut(s) 50, 53, 134, 247, 265, 394
MspI CCGG 4 cut(s) 114, 131, 149, 220
MspR9I CCNGG 3 cut(s) 132, 149, 221
MwoI GCNNNNNNNGC 2 cut(s) 297, 404
NciI CCSGG 3 cut(s) 132, 149, 221
NdeII GATC 3 cut(s) 101, 153, 366
NlaIV GGNNCC 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 277, 290, 397
Psp124BI GAGCTC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 2 cut(s) 101, 366
SacI GAGCTC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 92
SatI GCNGC 3 cut(s) 276, 289, 396
Sau3AI GATC 3 cut(s) 101, 153, 366
ScrFI CCNGG 3 cut(s) 132, 149, 221
SduI GDGCHC 2 cut(s) 87, 356
SetI ASST 8 cut(s) 126, 141, 167, 257, 277, 333, 356, 447
SfaNI GCATC 1 cut(s) 414
SsiI CCGC 4 cut(s) 128, 288, 294, 396
SspI AATATT 1 cut(s) 17
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 130, 147, 219
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 350
TauI GCSGC 2 cut(s) 291, 398
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.