Rorug07G0227800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000192
Physical Location & Seq
Forward (+)
20832684 .. 20833205
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0227800.1

Sequence Viewer

Length: 522 bp
ATGGGTGAGTTTCTCACTTCTACTTCCTCCGGAAATCCCTATGAGGTTCTTTGGAAGAAGATATGGAATACAAGGATCCCTGGCAAAGTCAAAATTTGCTTATGGAGGGCTGCCAACAGTATCTTGCCTACTCGTGAAAGTTTAAGCTACAAGGGATATATTGGACCCTTCAATTGTTTACTTTGTAATGAGGCCTTGGAAACAAGTACTCATGTGTTCTGCCACTGCCAGGTTGCACAAGAGGCCATTGCAATAGCAAATATTCCAACTGTTAGCTGTCTGCCAGGAAGTTTCAAAGAATGGCTATTACACCAGGGCCATCATCTAAATAAAGAGCAATGGGATGAGAAGCTACTTATGCTCCTTTGGGCTCTTTGGAAAAATAGAAACAGTAAGCTGTGGAACAATAAGTGCATCAATGCTCAAGCACTTGTAGTTACTACGTTATCTTGGTATGAACAATTTCTACAAGCGCAGAAGCCTTCCTTGCATGAACCAGCTGCCAAACCGAGTAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

173

Amino Acids

19.82

Weight (kDa)

8.98

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 12 - 81 1.2e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 29
AclWI GGATC 2 cut(s) 70, 83
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 172, 295
AjnI CCWGG 4 cut(s) 79, 228, 283, 312
AluBI AGCT 5 cut(s) 147, 276, 352, 397, 500
AluI AGCT 5 cut(s) 147, 276, 352, 397, 500
AlwI GGATC 2 cut(s) 70, 83
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 3 cut(s) 192, 243, 316
ApeKI GCWGC 2 cut(s) 110, 500
ApoI RAATTY 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 2 cut(s) 164, 316
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 164
BamHI GGATCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 373
BauI CACGAG 1 cut(s) 132
BbvI GCAGC 2 cut(s) 97, 487
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 4 cut(s) 81, 230, 285, 314
BisI GCNGC 2 cut(s) 111, 501
BlsI GCNGC 2 cut(s) 112, 502
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 4 cut(s) 81, 230, 285, 314
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 164, 316
BmiI GGNNCC 2 cut(s) 77, 166
BmrFI CCNGG 4 cut(s) 81, 230, 285, 314
BmsI GCATC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 79, 195, 313
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 246, 344
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 4 cut(s) 81, 230, 285, 314
BseDI CCNNGG 3 cut(s) 79, 195, 313
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 2 cut(s) 246, 344
BseXI GCAGC 2 cut(s) 97, 487
BshFI GGCC 3 cut(s) 194, 245, 318
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 229
BsnI GGCC 3 cut(s) 194, 245, 318
Bsp1286I GDGCHC 1 cut(s) 373
Bsp13I TCCGGA 1 cut(s) 29
Bsp143I GATC 1 cut(s) 75
BspANI GGCC 3 cut(s) 194, 245, 318
BspEI TCCGGA 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 77, 166
BspPI GGATC 2 cut(s) 70, 83
BsrDI GCAATG 2 cut(s) 246, 344
BssECI CCNNGG 3 cut(s) 79, 195, 313
BssMI GATC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 81, 230, 285, 314
Bst4CI ACNGT 3 cut(s) 119, 271, 392
BstF5I GGATG 1 cut(s) 349
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 242, 358, 487
BstNI CCWGG 4 cut(s) 81, 230, 285, 314
BstSCI CCNGG 4 cut(s) 79, 228, 283, 312
BstV1I GCAGC 2 cut(s) 97, 487
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 3 cut(s) 194, 245, 318
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 223, 517
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 2 cut(s) 164, 316
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 212, 491
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 164
EcoRII CCWGG 4 cut(s) 79, 228, 283, 312
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 215, 494
FaiI YATR 8 cut(s) 42, 64, 103, 159, 213, 359, 456, 492
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 2 cut(s) 211, 490
Fnu4HI GCNGC 2 cut(s) 111, 501
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 111, 501
GlaI GCGC 1 cut(s) 474
GluI GCNGC 2 cut(s) 111, 501
HaeIII GGCC 3 cut(s) 194, 245, 318
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 475
Hin1II CATG 2 cut(s) 215, 494
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 179, 515
Hpy188III TCNNGA 2 cut(s) 30, 134
Hpy8I GTNNAC 2 cut(s) 179, 515
HpyAV CCTTC 2 cut(s) 178, 492
HpyCH4III ACNGT 3 cut(s) 119, 271, 392
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 4 cut(s) 236, 251, 414, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 358, 487
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 2 cut(s) 215, 494
HspAI GCGC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 29
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 2 cut(s) 97, 487
LweI GCATC 1 cut(s) 423
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 67, 70
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 93, 172, 461
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 37, 37, 99, 184, 235
MroI TCCGGA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 4 cut(s) 81, 230, 285, 314
MunI CAATTG 1 cut(s) 172
MvaI CCWGG 4 cut(s) 81, 230, 285, 314
MwoI GCNNNNNNNGC 3 cut(s) 242, 358, 487
NdeII GATC 1 cut(s) 75
NlaIII CATG 2 cut(s) 215, 494
NlaIV GGNNCC 2 cut(s) 77, 166
PceI AGGCCT 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 462
PkrI GCNGC 2 cut(s) 112, 502
Psp6I CCWGG 4 cut(s) 79, 228, 283, 312
PspGI CCWGG 4 cut(s) 79, 228, 283, 312
PspN4I GGNNCC 2 cut(s) 77, 166
PspPI GGNCC 2 cut(s) 164, 316
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PsuI RGATCY 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 111, 501
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 2 cut(s) 164, 316
ScaI AGTACT 1 cut(s) 208
ScrFI CCNGG 4 cut(s) 81, 230, 285, 314
SduI GDGCHC 1 cut(s) 373
SetI ASST 8 cut(s) 48, 149, 234, 278, 354, 399, 446, 502
SfaNI GCATC 1 cut(s) 423
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 3 cut(s) 93, 172, 461
SseBI AGGCCT 1 cut(s) 194
SspI AATATT 1 cut(s) 262
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 4 cut(s) 79, 228, 283, 312
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 119, 271, 392
TaiI ACGT 1 cut(s) 446
TasI AATT 3 cut(s) 93, 172, 461
TatI WGTACW 1 cut(s) 206
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 230
TseI GCWGC 2 cut(s) 110, 500
TspDTI ATGAA 2 cut(s) 471, 507
TspRI CASTG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.