FvH4_7g14310

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000192
Physical Location & Seq
Reverse (-)
12664467 .. 12664923
457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14310.t1

Sequence Viewer

Length: 336 bp
ATGTATGAGGGATATCTAATTACAAAAGGAACGAAGTTATATGTGACTGTTTTTTCCACACATAAGAACCCGGAATACTTTCCAGATCCTCACAAGTTTGATCCGTCAAGGTTTGAAGGACAAGGACCACCTCCTTTCTCGTATGTTCCTTTTGGTGGAGGACCTCGAATGTGTCCCGGAAAAGAAAACGCTCGAGTCCAGATATTGGTTTTCATCTACAACCTGGTCACAAGATACAAGTGGGAGATGGTTTTTCCTGACGAGAAGATGGTAGCGGACTTGGTTCCTTATACTACACATGGACTTCCCCTTCATCTGTTTTCTCGTAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

112

Amino Acids

12.85

Weight (kDa)

9.01

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 84 1.3e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AciI CCGC 1 cut(s) 275
AclWI GGATC 2 cut(s) 80, 95
AfiI CCNNNNNNNGG 2 cut(s) 155, 205
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 222
AlwI GGATC 2 cut(s) 80, 95
Ama87I CYCGRG 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 125, 161
AsuC2I CCSGG 2 cut(s) 71, 177
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 125, 161
BccI CCATC 2 cut(s) 241, 262
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 71, 177
Bme1390I CCNGG 3 cut(s) 71, 177, 224
Bme18I GGWCC 2 cut(s) 125, 161
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 125, 161
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 3 cut(s) 71, 177, 224
BpuMI CCSGG 2 cut(s) 71, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 205
BseBI CCWGG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 155, 205
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 71, 177
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 155, 205
BsmFI GGGAC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 2 cut(s) 85, 100
BspACI CCGC 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 80, 95
BssMI GATC 2 cut(s) 85, 100
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 49
BstKTI GATC 2 cut(s) 88, 103
BstMBI GATC 2 cut(s) 85, 100
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 69, 175, 222
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 125, 161
CsiI ACCWGGT 1 cut(s) 222
CviAII CATG 1 cut(s) 299
DpnI GATC 2 cut(s) 87, 102
DpnII GATC 2 cut(s) 85, 100
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 125, 161
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 14
FaeI CATG 1 cut(s) 302
FaiI YATR 8 cut(s) 6, 40, 42, 63, 144, 291, 300, 334
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 298
HapII CCGG 2 cut(s) 71, 177
Hin1II CATG 1 cut(s) 302
HinfI GANTC 1 cut(s) 195
HpaII CCGG 2 cut(s) 71, 177
Hpy188III TCNNGA 3 cut(s) 83, 199, 257
HpyAV CCTTC 2 cut(s) 110, 320
HpyCH4III ACNGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 302
Kzo9I GATC 2 cut(s) 85, 100
LpnPI CCDG 7 cut(s) 84, 96, 190, 209, 212, 236, 270
MabI ACCWGGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 43, 226
MalI GATC 2 cut(s) 87, 102
MboI GATC 2 cut(s) 85, 100
MboII GAAGA 1 cut(s) 277
MflI RGATCY 1 cut(s) 85
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 4 cut(s) 99, 141, 152, 174
MroXI GAANNNNTTC 1 cut(s) 78
MspI CCGG 2 cut(s) 71, 177
MspR9I CCNGG 3 cut(s) 71, 177, 224
MvaI CCWGG 1 cut(s) 224
NciI CCSGG 2 cut(s) 71, 177
NdeII GATC 2 cut(s) 85, 100
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 43, 226
PaeR7I CTCGAG 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 175
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 125, 161
PspPPI RGGWCCY 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 59, 91
PsuI RGATCY 1 cut(s) 85
Sau3AI GATC 2 cut(s) 85, 100
Sau96I GGNCC 2 cut(s) 125, 161
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 3 cut(s) 71, 177, 224
SetI ASST 4 cut(s) 113, 133, 166, 225
SexAI ACCWGGT 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 125, 161
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 1 cut(s) 18
SsiI CCGC 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 69, 175, 222
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 166, 193
TasI AATT 1 cut(s) 18
TseFI GTSAC 2 cut(s) 43, 226
Tsp45I GTSAC 2 cut(s) 43, 226
TspDTI ATGAA 2 cut(s) 202, 302
TspGWI ACGGA 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 125, 161
XhoI CTCGAG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.