Rh1DG256300

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
46982444 .. 46983786
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG256300.1

Sequence Viewer

Length: 999 bp
ATGGTGATGGAGCAATATTATAATTTCCATCCCATCACCCTCCTCTTTGGCTTTGTTTCCTTTCTGGCAATCTCCCTCTTGGTGCTCTTCAACAGGCACAGATCCCAGTTCACCGGCAACAACCTCCCGCCGGGTAACGTCGGCTACCCGGTGATCGGAGAGAGCTACGAGTTCGTCTCTTCAGCCCGGAAAGGCCACCCCGAGAAGTTCATCTTAGACCGGGTGAACAAGCACTCCTCCCAAGTCTTCAAGACCTCTTTGATTGGGGAGAGAGCTGCCTTCTTCTGCGGCACCGCTTGCAACAAGTTCTTGTTCTCCAATGAGAAAAAGCTTGTCCAAGTCTGGTTTTCGAGCTCTGTCAACAAGATCTTCCGTTCTTCCACCGAAACATCTGCCGCAGAGGACGCCAACAAGACGAGAAAGATGCTACACAACTTCTTGAAGCTCAACGCTCTGCAACGATACTTCGGAATCATTAACCAGTGTACCCAATCCCACTTTGCAGATAGCTGGGAAAACCAAAACGAAATTCATGCCCTAGAACTCGCCAAGAACTACACCTTCAAGCTTGCTGCACGCTTGTTTGTTAGCCTTGAAGATAAGGCGGACATTGAAAAACTAAGCAAACCATTCCGTGCAGTGAATGCCGGAACCATATCGCTGCCCATTGACTTCCCCGGAACTCTGTTTAGTAAAGCCATCAAGGCCGCCAACTTGATTAGGAAGGATTTGTACAAGATCATCAAGCAGAGGAAGGTCGACTTAGCAGAGGGCAATGCATCCCCCACACAAGACATGTTATCACACATGCTCTTGACCTGTGATGAAGATGGAACATATCTGAAGGAATCCGATATCGCCGATACGATTCTTGGTATGTTGGTTGCCGGCTTCGACACACTTAGTGCTGAATTGACTTTCATTGTGAAGTATCTTGGCGAGCTACCTCATATCTATGATGCAGTCTACAAAGGTATATATGCACGTAGTACTGCATGA

Protein Analysis

332

Amino Acids

37.43

Weight (kDa)

8.84

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 325 1.3e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 2 cut(s) 759, 966
AciI CCGC 6 cut(s) 128, 288, 294, 396, 605, 708
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 2 cut(s) 165, 863
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 3 cut(s) 487, 734, 991
AfiI CCNNNNNNNGG 2 cut(s) 130, 155
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 6 cut(s) 91, 250, 442, 565, 596, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 8 cut(s) 165, 275, 331, 354, 445, 510, 568, 943
AluI AGCT 8 cut(s) 165, 275, 331, 354, 445, 510, 568, 943
Alw21I GWGCWC 2 cut(s) 87, 356
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 2 cut(s) 193, 705
ApeKI GCWGC 3 cut(s) 275, 572, 661
ApoI RAATTY 1 cut(s) 528
AsuC2I CCSGG 5 cut(s) 132, 149, 187, 221, 678
AsuHPI GGTGA 5 cut(s) 16, 28, 103, 163, 235
AvaI CYCGRG 1 cut(s) 200
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 356
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 87, 356
BbvI GCAGC 3 cut(s) 262, 559, 648
BccI CCATC 4 cut(s) 36, 41, 707, 824
BcgI CGANNNNNNTGC 6 cut(s) 374, 406, 408, 440, 515, 549
BcnI CCSGG 5 cut(s) 132, 149, 187, 221, 678
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 704
BglII AGATCT 1 cut(s) 366
BisI GCNGC 6 cut(s) 276, 289, 396, 573, 662, 708
BlsI GCNGC 6 cut(s) 277, 290, 397, 574, 663, 709
BmcAI AGTACT 1 cut(s) 991
Bme1390I CCNGG 5 cut(s) 132, 149, 187, 221, 678
BmeT110I CYCGRG 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 292, 652
BmrFI CCNGG 5 cut(s) 132, 149, 187, 221, 678
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 3 cut(s) 414, 788, 949
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuMI CCSGG 5 cut(s) 132, 149, 187, 221, 678
BsaAI YACGTR 1 cut(s) 986
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 155
Bse118I RCCGGY 2 cut(s) 113, 887
Bse1I ACTGG 2 cut(s) 106, 481
Bse3DI GCAATG 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 2 cut(s) 28, 779
BseLI CCNNNNNNNGG 2 cut(s) 130, 155
BseMI GCAATG 1 cut(s) 781
BseNI ACTGG 2 cut(s) 106, 481
BseRI GAGGAG 2 cut(s) 32, 226
BseXI GCAGC 3 cut(s) 262, 559, 648
BseYI CCCAGC 1 cut(s) 510
BsgI GTGCAG 2 cut(s) 558, 657
BshFI GGCC 2 cut(s) 195, 707
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 87, 356
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 8 cut(s) 114, 131, 149, 187, 220, 648, 678, 888
BslI CCNNNNNNNGG 2 cut(s) 130, 155
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 2 cut(s) 195, 707
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 87, 356
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 4 cut(s) 101, 153, 366, 738
BspACI CCGC 6 cut(s) 128, 288, 294, 396, 605, 708
BspANI GGCC 2 cut(s) 195, 707
BspLI GGNNCC 2 cut(s) 292, 652
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 2 cut(s) 113, 887
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 2 cut(s) 106, 481
BssAI RCCGGY 2 cut(s) 113, 887
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 4 cut(s) 101, 153, 366, 738
BssNI GRCGYC 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 92, 184
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 2 cut(s) 297, 644
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 986
BstC8I GCNNGC 5 cut(s) 298, 570, 577, 889, 941
BstDEI CTNAG 4 cut(s) 214, 620, 763, 902
BstF5I GGATG 2 cut(s) 28, 779
BstKTI GATC 4 cut(s) 104, 156, 369, 741
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 4 cut(s) 101, 153, 366, 738
BstMWI GCNNNNNNNGC 4 cut(s) 297, 404, 644, 704
BstNSI RCATGY 2 cut(s) 799, 811
BstSCI CCNGG 5 cut(s) 130, 147, 185, 219, 676
BstV1I GCAGC 3 cut(s) 262, 559, 648
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 101, 366
BstYI RGATCY 2 cut(s) 101, 366
BsuRI GGCC 2 cut(s) 195, 707
BtsCI GGATG 2 cut(s) 28, 779
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 488, 645
Cac8I GCNNGC 5 cut(s) 298, 570, 577, 889, 941
Cfr10I RCCGGY 2 cut(s) 113, 887
CseI GACGC 1 cut(s) 413
Csp6I GTAC 3 cut(s) 486, 733, 990
CviAII CATG 4 cut(s) 533, 796, 808, 996
CviQI GTAC 3 cut(s) 486, 733, 990
DdeI CTNAG 4 cut(s) 214, 620, 763, 902
DpnI GATC 4 cut(s) 103, 155, 368, 740
DpnII GATC 4 cut(s) 101, 153, 366, 738
DraIII CACNNNGTG 1 cut(s) 905
Eam1104I CTCTTC 2 cut(s) 92, 184
EarI CTCTTC 2 cut(s) 92, 184
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 856
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 165, 863
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 354
EcoRV GATATC 1 cut(s) 856
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 4 cut(s) 536, 799, 811, 999
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 746, 778
FatI CATG 4 cut(s) 532, 795, 807, 995
FauI CCCGC 1 cut(s) 135
FblI GTMKAC 2 cut(s) 759, 966
Fnu4HI GCNGC 6 cut(s) 276, 289, 396, 573, 662, 708
FokI GGATG 2 cut(s) 15, 766
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 6 cut(s) 276, 289, 396, 573, 662, 708
FspBI CTAG 1 cut(s) 539
GluI GCNGC 6 cut(s) 276, 289, 396, 573, 662, 708
GsaI CCCAGC 1 cut(s) 514
HaeIII GGCC 2 cut(s) 195, 707
HapII CCGG 8 cut(s) 114, 131, 149, 187, 220, 648, 678, 888
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 536, 799, 811, 999
HincII GTYRAC 2 cut(s) 361, 760
HindII GTYRAC 2 cut(s) 361, 760
HindIII AAGCTT 2 cut(s) 329, 566
HinfI GANTC 3 cut(s) 471, 848, 868
HpaII CCGG 8 cut(s) 114, 131, 149, 187, 220, 648, 678, 888
HphI GGTGA 5 cut(s) 16, 28, 103, 163, 235
Hpy166II GTNNAC 6 cut(s) 111, 226, 361, 486, 760, 967
Hpy188I TCNGA 4 cut(s) 158, 470, 843, 853
Hpy188III TCNNGA 3 cut(s) 250, 439, 814
Hpy8I GTNNAC 6 cut(s) 111, 226, 361, 486, 760, 967
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 5 cut(s) 289, 571, 718, 748, 838
HpyCH4IV ACGT 2 cut(s) 138, 985
HpyCH4V TGCA 9 cut(s) 300, 457, 503, 575, 638, 779, 962, 983, 995
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 404, 644, 704
HpyF3I CTNAG 4 cut(s) 214, 620, 763, 902
HpySE526I ACGT 2 cut(s) 138, 985
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 536, 799, 811, 999
KroI GCCGGC 1 cut(s) 887
KroNI GCCGGC 1 cut(s) 889
Kzo9I GATC 4 cut(s) 101, 153, 366, 738
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 262, 559, 648
LweI GCATC 3 cut(s) 414, 788, 949
MaeI CTAG 1 cut(s) 539
MaeII ACGT 2 cut(s) 138, 985
MaeIII GTNAC 1 cut(s) 134
MalI GATC 4 cut(s) 103, 155, 368, 740
MboI GATC 4 cut(s) 101, 153, 366, 738
MboII GAAGA 8 cut(s) 79, 171, 238, 274, 361, 369, 608, 839
MflI RGATCY 2 cut(s) 101, 366
MhlI GDGCHC 2 cut(s) 87, 356
MluCI AATT 3 cut(s) 22, 528, 911
Mph1103I ATGCAT 1 cut(s) 781
MroNI GCCGGC 1 cut(s) 887
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 954
MspI CCGG 8 cut(s) 114, 131, 149, 187, 220, 648, 678, 888
MspR9I CCNGG 5 cut(s) 132, 149, 187, 221, 678
Mva1269I GAATGC 1 cut(s) 649
MwoI GCNNNNNNNGC 4 cut(s) 297, 404, 644, 704
NaeI GCCGGC 1 cut(s) 889
NciI CCSGG 5 cut(s) 132, 149, 187, 221, 678
NdeII GATC 4 cut(s) 101, 153, 366, 738
NgoMIV GCCGGC 1 cut(s) 887
NlaIII CATG 4 cut(s) 536, 799, 811, 999
NlaIV GGNNCC 2 cut(s) 292, 652
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 2 cut(s) 799, 811
PciI ACATGT 1 cut(s) 795
PciSI GCTCTTC 1 cut(s) 92
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 889
PfeI GAWTC 3 cut(s) 471, 848, 868
PkrI GCNGC 6 cut(s) 277, 290, 397, 574, 663, 709
Ppu21I YACGTR 1 cut(s) 986
PscI ACATGT 1 cut(s) 795
PsiI TTATAA 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 292, 652
PsuI RGATCY 2 cut(s) 101, 366
RsaI GTAC 3 cut(s) 487, 734, 991
RsaNI GTAC 3 cut(s) 486, 733, 990
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 1 cut(s) 356
SalI GTCGAC 1 cut(s) 758
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 6 cut(s) 276, 289, 396, 573, 662, 708
Sau3AI GATC 4 cut(s) 101, 153, 366, 738
ScaI AGTACT 1 cut(s) 991
ScrFI CCNGG 5 cut(s) 132, 149, 187, 221, 678
SduI GDGCHC 2 cut(s) 87, 356
SfaNI GCATC 3 cut(s) 414, 788, 949
SmiMI CAYNNNNRTG 1 cut(s) 954
Sse9I AATT 3 cut(s) 22, 528, 911
SsiI CCGC 6 cut(s) 128, 288, 294, 396, 605, 708
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 5 cut(s) 130, 147, 185, 219, 676
TaiI ACGT 2 cut(s) 141, 988
TaqI TCGA 3 cut(s) 350, 759, 894
TasI AATT 3 cut(s) 22, 528, 911
TatI WGTACW 2 cut(s) 732, 989
TauI GCSGC 3 cut(s) 291, 398, 710
TfiI GAWTC 3 cut(s) 471, 848, 868
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 488, 645
TseI GCWGC 3 cut(s) 275, 572, 661
TspDTI ATGAA 4 cut(s) 199, 521, 840, 910
TspGWI ACGGA 2 cut(s) 362, 623
TspRI CASTG 2 cut(s) 488, 645
XapI RAATTY 1 cut(s) 528
XceI RCATGY 2 cut(s) 799, 811
XmiI GTMKAC 2 cut(s) 759, 966
XspI CTAG 1 cut(s) 539
ZrmI AGTACT 1 cut(s) 991
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.