Rh5CG190900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000192
Physical Location & Seq
Reverse (-)
19037104 .. 19037673
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG190900.1

Sequence Viewer

Length: 570 bp
ATGGACGAGGTCACCAAACAACATCTGGACTTGTATTGGTCATCCTCCTCTTCCTCGTCGGTTGATTATGTAAAAGAAAAGGATCAGAAAGTGATTATCATAGTCTACCCATTAGCCAAGAAGTACACCTTCACTTTAGCATGTAGACTCTTCTTAAACATTGAGGATCCAAAGCTAGTTGCCAAACTAGAGGAGTCAATTCGGCATATATCTTCGGGCTTCATTTCGCTACCAATAGATTTGCCAGGCACGAAATTCAACCGAGCCATTCGAGCATCCAAGCAAATCAAGAAGGAAATTGAGGAGATGGTTAAGCAGAGGAGGACAGATCTACATCTTCATCTTTTGGAGACTAGTAGTAACCATCATCAAGATTTGTTGTCTAGGTTGCTCATGGAGACATATAGCGATGGGAAAGAGCTGATGAAGGAATCAGACATTGCCAACAAGTTGTATGGTCTAATAGTCGGTGCTTACGACAATATAAGTACCACCTTGGTGTCGATTATCATGTTTCTGTCGCAGCTTCCTCATGTTTATGATGCCGTCCTTAAAGGTATACGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

189

Amino Acids

21.67

Weight (kDa)

7.83

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 22 - 186 2.3e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 105, 145, 559
AclWI GGATC 3 cut(s) 90, 161, 174
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 2 cut(s) 125, 490
AgsI TTSAA 1 cut(s) 259
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 3 cut(s) 175, 421, 526
AluI AGCT 3 cut(s) 175, 421, 526
Alw26I GTCTC 2 cut(s) 344, 392
AlwI GGATC 3 cut(s) 90, 161, 174
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 4
BamHI GGATCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 535
BccI CCATC 3 cut(s) 301, 372, 404
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 344, 392
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 4 cut(s) 176, 188, 354, 384
BglII AGATCT 1 cut(s) 328
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 284, 532
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 2 cut(s) 41, 275
BseJI GATNNNNATC 1 cut(s) 333
BseMI GCAATG 1 cut(s) 438
BseRI GAGGAG 4 cut(s) 37, 206, 317, 334
BseXI GCAGC 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 344, 392
Bsp143I GATC 3 cut(s) 82, 166, 328
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 3 cut(s) 90, 161, 174
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 82, 166, 328
BssNAI GTATAC 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 55, 155
BstBAI YACGTR 1 cut(s) 563
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 41, 275
BstKTI GATC 3 cut(s) 85, 169, 331
BstMAI GTCTC 2 cut(s) 344, 392
BstMBI GATC 3 cut(s) 82, 166, 328
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 144
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 244
BstSNI TACGTA 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 535
BstX2I RGATCY 2 cut(s) 166, 328
BstYI RGATCY 2 cut(s) 166, 328
BstZ17I GTATAC 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 41, 275
Csp6I GTAC 2 cut(s) 124, 489
CviAII CATG 4 cut(s) 141, 394, 511, 533
CviJI RGCY 6 cut(s) 116, 175, 219, 266, 421, 526
CviKI_1 RGCY 6 cut(s) 116, 175, 219, 266, 421, 526
CviQI GTAC 2 cut(s) 124, 489
DpnI GATC 3 cut(s) 84, 168, 330
DpnII GATC 3 cut(s) 82, 166, 328
Eam1104I CTCTTC 2 cut(s) 55, 155
EarI CTCTTC 2 cut(s) 55, 155
Eco105I TACGTA 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 4 cut(s) 144, 397, 514, 536
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 4 cut(s) 140, 393, 510, 532
FblI GTMKAC 3 cut(s) 105, 145, 559
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 2 cut(s) 28, 262
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 4 cut(s) 176, 188, 354, 384
GluI GCNGC 1 cut(s) 524
Hin1II CATG 4 cut(s) 144, 397, 514, 536
HinfI GANTC 3 cut(s) 147, 194, 431
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 4 cut(s) 106, 126, 146, 560
Hpy188I TCNGA 2 cut(s) 87, 436
Hpy188III TCNNGA 3 cut(s) 26, 289, 371
Hpy8I GTNNAC 4 cut(s) 106, 126, 146, 560
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 139, 286, 421
HpyCH4IV ACGT 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 4 cut(s) 144, 397, 514, 536
Kzo9I GATC 3 cut(s) 82, 166, 328
LpnPI CCDG 3 cut(s) 11, 231, 258
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 2 cut(s) 284, 532
MaeI CTAG 4 cut(s) 176, 188, 354, 384
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 10, 359
MalI GATC 3 cut(s) 84, 168, 330
MboI GATC 3 cut(s) 82, 166, 328
MboII GAAGA 4 cut(s) 42, 142, 204, 329
MflI RGATCY 2 cut(s) 166, 328
MluCI AATT 4 cut(s) 198, 254, 297, 565
MlyI GAGTC 2 cut(s) 141, 203
MnlI CCTC 9 cut(s) 55, 58, 64, 157, 184, 295, 312, 315, 540
MseI TTAA 4 cut(s) 155, 312, 552, 568
MslI CAYNNNNRTG 2 cut(s) 497, 537
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 3 cut(s) 82, 166, 328
NlaIII CATG 4 cut(s) 144, 397, 514, 536
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 144
OliI CACNNNNGTG 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 2 cut(s) 141, 202
PpsI GAGTC 2 cut(s) 141, 202
Ppu21I YACGTR 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 2 cut(s) 166, 328
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 2 cut(s) 125, 490
RsaNI GTAC 2 cut(s) 124, 489
RseI CAYNNNNRTG 2 cut(s) 497, 537
SaqAI TTAA 4 cut(s) 155, 312, 552, 568
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 3 cut(s) 82, 166, 328
SchI GAGTC 2 cut(s) 141, 203
ScrFI CCNGG 1 cut(s) 246
SetI ASST 9 cut(s) 12, 131, 177, 389, 423, 497, 528, 559, 565
SfaNI GCATC 2 cut(s) 284, 532
SmiMI CAYNNNNRTG 2 cut(s) 497, 537
SnaBI TACGTA 1 cut(s) 563
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 4 cut(s) 198, 254, 297, 565
SspMI CTAG 4 cut(s) 176, 188, 354, 384
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 495
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 271, 503
TasI AATT 4 cut(s) 198, 254, 297, 565
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 4 cut(s) 155, 312, 552, 568
Tru9I TTAA 4 cut(s) 155, 312, 552, 568
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 211, 329, 440
Tth111I GACNNNGTC 1 cut(s) 8
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 3 cut(s) 105, 145, 559
XspI CTAG 4 cut(s) 176, 188, 354, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.