Rh7AG004900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000192
Physical Location & Seq
Reverse (-)
347305 .. 350085
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG004900.1

Sequence Viewer

Length: 675 bp
ATGGAGGCGGAGTTACTCATCATCCTTGCTTTGGTTCTCTTTGTTTCTCTCTATCTTTTTCGTTTGTTGAACAGTAATGTTAATCCTAGGCGTATGAGTGGCAGCGGCACCGAACATGAAGTGGCCGTTGAGCTGCCACCAGGAAGCACTGTTTGGCCAATCATTGGTGAAACCCTAGAGTATCTACGCACAGCCAAACAGGGTGTTCCTGAAAAGTTCATAGTGGACAGGAGGAACAAGTACTCATCCTGCAAGGTGTTCAAGACCTCACTGCTGCGTGAATCTATGGCCGTGATGTGCACTGCTGCTGGAAACAAATTCCTATTTTCTAATGAGAACAAACTCGTCAAGTCTTGGTGGCCTGCAAATTTCGAAAAGATCTTTGCCAACTCTGAGAAAACAGACACCACCCAAGAGTCCATTCGATTGCGCAAAGTTTTGTCTCCGTTTCTCAAGCCTGATGCTCTCCACAGGTACATAAGGGTCATGGATGAAGTCACCAAACAGCATTTGGACGAGTATTGGTCGTTTTCATTGTTTGATTATGAAAAAGAAGACGATGAAATCGTGATCATAAAAGTTCACCCGCTTGCAAAGAACATATATGCTTATGTATGGACAGAGCAAATGGAGATTGCAGAATCAAAAGCAGAAGGAGAGTTGCTGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

224

Amino Acids

25.95

Weight (kDa)

5.9

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 3 cut(s) 8, 105, 587
AcoI YGGCCR 3 cut(s) 123, 155, 288
AcsI RAATTY 2 cut(s) 317, 367
AfaI GTAC 2 cut(s) 242, 476
AfiI CCNNNNNNNGG 2 cut(s) 31, 164
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 2 cut(s) 70, 262
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 4 cut(s) 136, 168, 405, 437
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 447
Alw44I GTGCAC 1 cut(s) 298
AoxI GGCC 4 cut(s) 123, 155, 288, 359
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 4 cut(s) 102, 133, 274, 305
ApoI RAATTY 2 cut(s) 317, 367
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 432
AsuHPI GGTGA 3 cut(s) 179, 490, 575
AsuII TTCGAA 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 4 cut(s) 114, 120, 261, 292
BceAI ACGGC 2 cut(s) 110, 275
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 2 cut(s) 87, 176
BglII AGATCT 1 cut(s) 378
BisI GCNGC 5 cut(s) 103, 106, 134, 275, 306
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 5 cut(s) 104, 107, 135, 276, 307
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 164
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 21, 245, 496
BseLI CCNNNNNNNGG 2 cut(s) 31, 164
BseMII CTCAG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 4 cut(s) 114, 120, 261, 292
BshFI GGCC 4 cut(s) 125, 157, 290, 361
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 31, 164
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 4 cut(s) 125, 157, 290, 361
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 378, 570
BspACI CCGC 3 cut(s) 8, 105, 587
BspANI GGCC 4 cut(s) 125, 157, 290, 361
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 378, 570
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 74, 151
BstBI TTCGAA 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 363, 591
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 21, 245, 496
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 381, 573
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 2 cut(s) 378, 570
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 4 cut(s) 114, 120, 261, 292
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 4 cut(s) 125, 157, 290, 361
BtsCI GGATG 3 cut(s) 21, 245, 496
BtsI GCAGTG 2 cut(s) 269, 300
BtsIMutI CAGTG 3 cut(s) 147, 269, 300
Cac8I GCNNGC 2 cut(s) 363, 591
CfoI GCGC 1 cut(s) 432
Csp6I GTAC 2 cut(s) 241, 475
CviAII CATG 3 cut(s) 116, 487, 670
CviJI RGCY 7 cut(s) 125, 133, 157, 194, 290, 361, 457
CviKI_1 RGCY 7 cut(s) 125, 133, 157, 194, 290, 361, 457
CviQI GTAC 2 cut(s) 241, 475
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 380, 572
DpnII GATC 2 cut(s) 378, 570
EaeI YGGCCR 3 cut(s) 123, 155, 288
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 119, 490, 673
FatI CATG 3 cut(s) 115, 486, 669
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 5 cut(s) 103, 106, 134, 275, 306
FokI GGATG 3 cut(s) 8, 232, 503
Fsp4HI GCNGC 5 cut(s) 103, 106, 134, 275, 306
FspBI CTAG 2 cut(s) 87, 176
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 5 cut(s) 103, 106, 134, 275, 306
HaeIII GGCC 4 cut(s) 125, 157, 290, 361
HhaI GCGC 1 cut(s) 432
Hin1II CATG 3 cut(s) 119, 490, 673
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 281, 416, 641
HphI GGTGA 3 cut(s) 179, 490, 575
Hpy166II GTNNAC 3 cut(s) 226, 300, 583
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 3 cut(s) 209, 262, 568
Hpy8I GTNNAC 3 cut(s) 226, 300, 583
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 2 cut(s) 74, 151
HpyCH4V TGCA 5 cut(s) 252, 300, 365, 593, 638
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 3 cut(s) 119, 490, 673
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 2 cut(s) 378, 570
Lsp1109I GCAGC 4 cut(s) 114, 120, 261, 292
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 87, 176
MaeIII GTNAC 2 cut(s) 12, 496
MalI GATC 2 cut(s) 380, 572
MboI GATC 2 cut(s) 378, 570
MboII GAAGA 1 cut(s) 566
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 302
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 2 cut(s) 317, 367
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 2 cut(s) 225, 277
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
NdeII GATC 2 cut(s) 378, 570
NlaIII CATG 3 cut(s) 119, 490, 673
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 496
NsbI TGCGCA 1 cut(s) 431
NspI RCATGY 1 cut(s) 673
NspV TTCGAA 1 cut(s) 372
PciI ACATGT 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PfeI GAWTC 2 cut(s) 281, 641
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 5 cut(s) 104, 107, 135, 276, 307
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PscI ACATGT 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 2 cut(s) 242, 476
RsaNI GTAC 2 cut(s) 241, 475
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 5 cut(s) 103, 106, 134, 275, 306
Sau3AI GATC 2 cut(s) 378, 570
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 302
SetI ASST 4 cut(s) 135, 258, 269, 476
SfaNI GCATC 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 2 cut(s) 317, 367
SsiI CCGC 3 cut(s) 8, 105, 587
SspMI CTAG 2 cut(s) 87, 176
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 2 cut(s) 74, 151
TaqI TCGA 2 cut(s) 372, 424
TasI AATT 2 cut(s) 317, 367
TatI WGTACW 1 cut(s) 240
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 281, 641
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 3 cut(s) 154, 276, 307
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 4 cut(s) 102, 133, 274, 305
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 6 cut(s) 132, 208, 507, 522, 561, 576
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 3 cut(s) 154, 276, 307
Van91I CCANNNNNTGG 1 cut(s) 164
VneI GTGCAC 1 cut(s) 298
XapI RAATTY 2 cut(s) 317, 367
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 2 cut(s) 87, 176
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.