Rh1AG259000

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
47665999 .. 47668581
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG259000.1

Sequence Viewer

Length: 984 bp
ATGGTGATGGAGCAATATTATTTCCAACCCATCACCCTCCTCTTGGGCTTTGTTTCCTTTCTGGCAATCTCTCTCTTGGTGCTTTTCTACAGGCACAGATCCCAGTTCACCAGCAACAACCTCCCGCCAGGTAACGTCGGCTACCCGGTGATAGGAGAGACCTACGAGTTCGTCTCTTCGGGTCAGAAAGGCCACCCCGAGAAGTTCATCTTAGACCGGGTGAACAAGCACTCCTCCCAAGTCTTCAAGACCTCCTTGATTGGGGAGAGAACTGCCTTCTTCTGCGGCACCGCTTGCAACAAGTTCTTGTTCTCCAATGAAAACAAGCTTGTCAAAGTCTGGTTTCCTAGCTGTGTCGATAAGATCTTCCCTTCTTCCACCGGATCCGCCGCAGAGGAGGCCACAAAGATGAGAAGGATGCTACCCAACTTCGTGAAGCTCGACGCTCTGCAACGATACTTCGGAATCATTGACCAGTGTACCCAGTCCCACTTTGCAGATAGCTGGGAAAACCAAAAGGAAGTTCATGCCTTCGAACTCACCAAGAACTACACCTTCAAGCTTGCTGCACGCTTGTTTGTTAGCCTTGAAGATCAAGCGGACATAGAAAAACTCAGCAAACCGTTCCATGTAGTGAATGCCGGAATCACATCGATGCCCATTGACTTCCCCGGAACCCCATTTAATAAAGCCATCAAGGCCGCCAACTTGATTAGGAAGGATTTGTACAAGATCATCAAGCAGAGGAAGGTCGACTTAGCAGACGGTAATGCATCCCCCACACAAGACATGTTATCACACATGCTCTTGACCTCTGATGAAGATGGAACATATCTGAAGGAATCTGATATCGCCGATAAGATTCTTGGTATGTTGGTTGCCGGCTTCGACACACTAAGTGCTGAATTGACTTTCATTGTGAAGTATCTTGGCGAGCTTCCTCATATCTACAATGCAGTCTACAAGGTTATTTTCTCGGTGTAA

Protein Analysis

327

Amino Acids

36.97

Weight (kDa)

7.67

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 42 - 322 4.8e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 753, 960
AciI CCGC 7 cut(s) 125, 285, 291, 387, 390, 599, 702
AclWI GGATC 3 cut(s) 93, 378, 391
AcuI CTGAAG 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 2 cut(s) 481, 728
AfiI CCNNNNNNNGG 3 cut(s) 43, 152, 261
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 3 cut(s) 247, 559, 590
AjnI CCWGG 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 328, 351, 439, 504, 562, 937
AluI AGCT 6 cut(s) 328, 351, 439, 504, 562, 937
Alw26I GTCTC 2 cut(s) 152, 178
AlwI GGATC 3 cut(s) 93, 378, 391
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 3 cut(s) 190, 399, 699
ApeKI GCWGC 1 cut(s) 566
AsuC2I CCSGG 3 cut(s) 146, 218, 672
AsuHPI GGTGA 6 cut(s) 16, 25, 100, 160, 232, 532
AsuII TTCGAA 1 cut(s) 534
AvaI CYCGRG 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BamHI GGATCC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BbsI GAAGAC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 38, 701, 818
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 3 cut(s) 146, 218, 672
BcoDI GTCTC 2 cut(s) 152, 178
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 698
BglII AGATCT 1 cut(s) 363
BisI GCNGC 4 cut(s) 286, 390, 567, 702
BlsI GCNGC 4 cut(s) 287, 391, 568, 703
Bme1390I CCNGG 4 cut(s) 129, 146, 218, 672
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 289, 385, 676
BmrFI CCNGG 4 cut(s) 129, 146, 218, 672
BmrI ACTGGG 2 cut(s) 97, 478
BmsI GCATC 3 cut(s) 408, 645, 782
BmuI ACTGGG 2 cut(s) 97, 478
BpiI GAAGAC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 3 cut(s) 146, 218, 672
Bsa29I ATCGAT 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 670
BsaWI WCCGGW 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 152, 261
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 3 cut(s) 103, 475, 484
BseBI CCWGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 2 cut(s) 423, 773
BseLI CCNNNNNNNGG 3 cut(s) 43, 152, 261
BseMII CTCAG 1 cut(s) 628
BseNI ACTGG 3 cut(s) 103, 475, 484
BseRI GAGGAG 3 cut(s) 29, 223, 410
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 3 cut(s) 192, 401, 701
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 6 cut(s) 146, 217, 381, 642, 672, 882
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 43, 152, 261
BsmAI GTCTC 2 cut(s) 152, 178
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 3 cut(s) 192, 401, 701
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 534
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 5 cut(s) 98, 363, 383, 592, 732
BspACI CCGC 7 cut(s) 125, 285, 291, 387, 390, 599, 702
BspANI GGCC 3 cut(s) 192, 401, 701
BspCNI CTCAG 1 cut(s) 627
BspDI ATCGAT 1 cut(s) 653
BspLI GGNNCC 3 cut(s) 289, 385, 676
BspPI GGATC 3 cut(s) 93, 378, 391
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 881
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 3 cut(s) 103, 475, 484
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 5 cut(s) 98, 363, 383, 592, 732
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 624, 767
Bst6I CTCTTC 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 726
BstBI TTCGAA 1 cut(s) 534
BstC8I GCNNGC 5 cut(s) 295, 564, 571, 883, 935
BstDEI CTNAG 4 cut(s) 211, 614, 757, 896
BstF5I GGATG 2 cut(s) 423, 773
BstKTI GATC 5 cut(s) 101, 366, 386, 595, 735
BstMAI GTCTC 2 cut(s) 152, 178
BstMBI GATC 5 cut(s) 98, 363, 383, 592, 732
BstMWI GCNNNNNNNGC 3 cut(s) 294, 398, 698
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 2 cut(s) 793, 805
BstSCI CCNGG 4 cut(s) 127, 144, 216, 670
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 3 cut(s) 98, 363, 383
BstYI RGATCY 3 cut(s) 98, 363, 383
Bsu15I ATCGAT 1 cut(s) 653
BsuRI GGCC 3 cut(s) 192, 401, 701
BsuTUI ATCGAT 1 cut(s) 653
BtsCI GGATG 2 cut(s) 423, 773
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 5 cut(s) 295, 564, 571, 883, 935
Cfr10I RCCGGY 1 cut(s) 881
ClaI ATCGAT 1 cut(s) 653
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 480, 727
CviAII CATG 4 cut(s) 527, 629, 790, 802
CviQI GTAC 2 cut(s) 480, 727
DdeI CTNAG 4 cut(s) 211, 614, 757, 896
DpnI GATC 5 cut(s) 100, 365, 385, 594, 734
DpnII GATC 5 cut(s) 98, 363, 383, 592, 732
DraIII CACNNNGTG 1 cut(s) 899
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 850
Eco57I CTGAAG 1 cut(s) 857
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 850
EcoT22I ATGCAT 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 4 cut(s) 530, 632, 793, 805
FaiI YATR 8 cut(s) 528, 605, 630, 791, 803, 832, 872, 945
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 239, 271, 740, 772
FaqI GGGAC 1 cut(s) 472
FatI CATG 4 cut(s) 526, 628, 789, 801
FauI CCCGC 1 cut(s) 132
FblI GTMKAC 2 cut(s) 753, 960
Fnu4HI GCNGC 4 cut(s) 286, 390, 567, 702
FokI GGATG 2 cut(s) 430, 760
Fsp4HI GCNGC 4 cut(s) 286, 390, 567, 702
FspBI CTAG 1 cut(s) 348
GluI GCNGC 4 cut(s) 286, 390, 567, 702
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 3 cut(s) 192, 401, 701
HapII CCGG 6 cut(s) 146, 217, 381, 642, 672, 882
HgaI GACGC 1 cut(s) 452
Hin1II CATG 4 cut(s) 530, 632, 793, 805
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 2 cut(s) 326, 560
HinfI GANTC 4 cut(s) 465, 645, 842, 862
HpaII CCGG 6 cut(s) 146, 217, 381, 642, 672, 882
HphI GGTGA 6 cut(s) 16, 25, 100, 160, 232, 532
Hpy166II GTNNAC 5 cut(s) 108, 223, 480, 754, 961
Hpy188I TCNGA 5 cut(s) 186, 464, 817, 837, 847
Hpy188III TCNNGA 3 cut(s) 247, 433, 808
Hpy8I GTNNAC 5 cut(s) 108, 223, 480, 754, 961
Hpy99I CGWCG 2 cut(s) 140, 446
HpyAV CCTTC 8 cut(s) 286, 381, 408, 541, 565, 712, 742, 832
HpyCH4III ACNGT 2 cut(s) 624, 767
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 297, 451, 497, 569, 773, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 398, 698
HpyF3I CTNAG 4 cut(s) 211, 614, 757, 896
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 530, 632, 793, 805
KroI GCCGGC 1 cut(s) 881
KroNI GCCGGC 1 cut(s) 883
Kzo9I GATC 5 cut(s) 98, 363, 383, 592, 732
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 3 cut(s) 408, 645, 782
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 131
MalI GATC 5 cut(s) 100, 365, 385, 594, 734
MboI GATC 5 cut(s) 98, 363, 383, 592, 732
MboII GAAGA 7 cut(s) 168, 235, 271, 358, 366, 602, 833
MflI RGATCY 3 cut(s) 98, 363, 383
MluCI AATT 1 cut(s) 905
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 1 cut(s) 775
MroNI GCCGGC 1 cut(s) 881
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 2 cut(s) 407, 653
MspI CCGG 6 cut(s) 146, 217, 381, 642, 672, 882
MspR9I CCNGG 4 cut(s) 129, 146, 218, 672
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 294, 398, 698
NaeI GCCGGC 1 cut(s) 883
NciI CCSGG 3 cut(s) 146, 218, 672
NdeII GATC 5 cut(s) 98, 363, 383, 592, 732
NgoMIV GCCGGC 1 cut(s) 881
NlaIII CATG 4 cut(s) 530, 632, 793, 805
NlaIV GGNNCC 3 cut(s) 289, 385, 676
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 2 cut(s) 793, 805
NspV TTCGAA 1 cut(s) 534
PciI ACATGT 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 883
PfeI GAWTC 4 cut(s) 465, 645, 842, 862
PkrI GCNGC 4 cut(s) 287, 391, 568, 703
PscI ACATGT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 289, 385, 676
PsuI RGATCY 3 cut(s) 98, 363, 383
RsaI GTAC 2 cut(s) 481, 728
RsaNI GTAC 2 cut(s) 480, 727
RseI CAYNNNNRTG 2 cut(s) 407, 653
SalI GTCGAC 1 cut(s) 752
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 4 cut(s) 286, 390, 567, 702
Sau3AI GATC 5 cut(s) 98, 363, 383, 592, 732
ScrFI CCNGG 4 cut(s) 129, 146, 218, 672
SfaNI GCATC 3 cut(s) 408, 645, 782
SfcI CTRYAG 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 407, 653
Sse9I AATT 1 cut(s) 905
SsiI CCGC 7 cut(s) 125, 285, 291, 387, 390, 599, 702
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 4 cut(s) 127, 144, 216, 670
TaaI ACNGT 2 cut(s) 624, 767
TaiI ACGT 1 cut(s) 138
TaqI TCGA 6 cut(s) 357, 441, 534, 653, 753, 888
TasI AATT 1 cut(s) 905
TatI WGTACW 1 cut(s) 726
TauI GCSGC 3 cut(s) 288, 392, 704
TfiI GAWTC 4 cut(s) 465, 645, 842, 862
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 482
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 5 cut(s) 196, 333, 515, 834, 904
TspRI CASTG 1 cut(s) 482
XceI RCATGY 2 cut(s) 793, 805
XmiI GTMKAC 2 cut(s) 753, 960
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.