Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

19584990 .. 19585551

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGATGGAGCAATATTATAATTTCCATCCCATCAGCCCCCTCTTTGGCTTTGTTTCCTTTCTGGCAATCTCCCTCTTGGTGCTCTTCAACAGGCACAGATCCCAGTTCACCGGCAACAATCTCCCGCCGGGTAACGTCGGCTACCCAGTGATCGGAGAGAGCTACGAGTTCGTCTCTTCAGCCCGAAAAGGCCACCCCGAGAAGTTCATCTTAGACCGGAGAGCTGCCTTCTTCTGCGGCACCGCTTGCAACAAGTTCTTGTTCTCCAATGAGAAAAAGCTTGTCCAAGTCTGGTTTCCGAGTTCTGTCAACAAGATCTTCCGTTCTTCCACCGAAACATCAGCCGCAGAGGACGCCAACAAGACGAGAAAGATGCTACACAACTTCTTGAAGCTCAACGCTCTGCCACGATACTTCGGAATCATTAACCAGTGTACCCAATCCCACTTTGCAGATAGCTGGGAAAACCAAAACGAAATTCATGCCCTAGAACTCGCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

170

Amino Acids

19.39

Weight (kDa)

9.35

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	4 cut(s)	128, 240, 246, 348
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	47, 155
AgsI	TTSAA	2 cut(s)	91, 394
AjuI	GAANNNNNNNTTGG	4 cut(s)	282, 314, 465, 497
AluBI	AGCT	5 cut(s)	165, 227, 283, 397, 462
AluI	AGCT	5 cut(s)	165, 227, 283, 397, 462
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	16, 103
AvaI	CYCGRG	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BanI	GGYRCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	36, 41
BcgI	CGANNNNNNTGC	4 cut(s)	358, 392, 467, 501
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	3 cut(s)	228, 241, 348
BlsI	GCNGC	3 cut(s)	229, 242, 349
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	100, 143
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	2 cut(s)	100, 143
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 155
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	3 cut(s)	106, 149, 433
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	47, 155
BseNI	ACTGG	3 cut(s)	106, 149, 433
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	462
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	114, 131, 220
BslI	CCNNNNNNNGG	2 cut(s)	47, 155
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	101, 153, 318
BspACI	CCGC	4 cut(s)	128, 240, 246, 348
BspANI	GGCC	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	106, 149, 433
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	3 cut(s)	101, 153, 318
BssNI	GRCGYC	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	92, 184
BstACI	GRCGYC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	104, 156, 321
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	101, 153, 318
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 356
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	101, 318
BstYI	RGATCY	2 cut(s)	101, 318
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	156, 440
Cac8I	GCNNGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	113
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	3 cut(s)	103, 155, 320
DpnII	GATC	3 cut(s)	101, 153, 318
Eam1104I	CTCTTC	2 cut(s)	92, 184
EarI	CTCTTC	2 cut(s)	92, 184
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	488
FaiI	YATR	2 cut(s)	21, 486
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	484
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	228, 241, 348
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	228, 241, 348
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	3 cut(s)	228, 241, 348
GsaI	CCCAGC	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	3 cut(s)	114, 131, 220
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	423
HpaII	CCGG	3 cut(s)	114, 131, 220
HphI	GGTGA	2 cut(s)	16, 103
Hpy166II	GTNNAC	3 cut(s)	111, 313, 438
Hpy188I	TCNGA	3 cut(s)	158, 303, 422
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	3 cut(s)	111, 313, 438
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	252, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 356
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	101, 153, 318
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	103, 155, 320
MboI	GATC	3 cut(s)	101, 153, 318
MboII	GAAGA	5 cut(s)	79, 171, 226, 313, 321
MflI	RGATCY	2 cut(s)	101, 318
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	22, 480
MnlI	CCTC	3 cut(s)	53, 86, 346
MseI	TTAA	1 cut(s)	429
MspI	CCGG	3 cut(s)	114, 131, 220
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	249, 356
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	101, 153, 318
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	229, 242, 349
PsiI	TTATAA	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	101, 318
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	228, 241, 348
Sau3AI	GATC	3 cut(s)	101, 153, 318
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	141, 167, 229, 285, 399, 464
SfaNI	GCATC	1 cut(s)	366
Sse9I	AATT	2 cut(s)	22, 480
SsiI	CCGC	4 cut(s)	128, 240, 246, 348
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	141
TasI	AATT	2 cut(s)	22, 480
TauI	GCSGC	2 cut(s)	243, 350
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	156, 440
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	199, 473
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	156, 440
XapI	RAATTY	1 cut(s)	480
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.