Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

32518666 .. 32519217

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTATAGATGACTATTGTTTTTCAGTGTTGATAATTATTTTCTCGGTGTTAATTAAAATAGAGCAAGTGGAGATTGTAAATTCAAAAGCCATAGGGGAGCCGTTGATATGGGATGACCTTCAGAAGATGAAATACTCGTGGAATGTAGCTCAAGAAGTGCTGAGGATGACACCACCTGTTCAAGGAAACTTTAGGGAAGCTTTAACCGATTTTGTCTTCAATGGTTTCACCATTCCAAAAGGGTGGAAGTTGTACTGGAGCGCAAACTGGACACACAAGAACGCCGATTGTTTCCCTGAACAGGAGAAATTCGATCCGTCAAGATTCGAAGGAAAGGGACCGGCACCTTACACATTTATTCCGTTCGGCGGAGGCCCGAGAATGTGTCCAGGGAATGAGTACGCTCGGGTGGTGATATTGGTGTTCATGCACCACTTGGTCACAAGGTTCAAGTGGGAGAAGGTTTTTCCTGATGAGAAGACCATTGTTATCGCTCTCCCCACCCCCGCCAAGGGACTTCCCATCCGCCTTTTTCATCACCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

183

Amino Acids

21.22

Weight (kDa)

8.4

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 155	1.6e-34	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	3 cut(s)	372, 510, 529
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	82, 311
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	257, 404
AfiI	CCNNNNNNNGG	5 cut(s)	185, 304, 371, 514, 515
AgsI	TTSAA	4 cut(s)	87, 185, 223, 454
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	2 cut(s)	152, 203
AluI	AGCT	2 cut(s)	152, 203
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	379, 408
AoxI	GGCC	1 cut(s)	376
ApoI	RAATTY	2 cut(s)	82, 311
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	341, 377
AsuHPI	GGTGA	3 cut(s)	223, 427, 533
AsuII	TTCGAA	1 cut(s)	330
AvaI	CYCGRG	2 cut(s)	379, 408
AvaII	GGWCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	346
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	2 cut(s)	211, 488
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	2 cut(s)	379, 408
BmgT120I	GGNCC	2 cut(s)	341, 377
BmiI	GGNNCC	3 cut(s)	102, 342, 348
BmrFI	CCNGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	211, 488
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	392, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 304, 371, 514, 515
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	263, 275
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	392, 513
BseGI	GGATG	3 cut(s)	121, 174, 525
BseLI	CCNNNNNNNGG	5 cut(s)	185, 304, 371, 514, 515
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	263, 275
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	346
BsiHKCI	CYCGRG	2 cut(s)	379, 408
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	354, 531
BslI	CCNNNNNNNGG	5 cut(s)	185, 304, 371, 514, 515
BsmFI	GGGAC	2 cut(s)	354, 531
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	2 cut(s)	379, 408
Bsp119I	TTCGAA	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	3 cut(s)	372, 510, 529
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	102, 342, 348
BspPI	GGATC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	263, 275
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	392, 513
BssMI	GATC	1 cut(s)	316
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	121, 174, 525
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	211, 488
BstXI	CCANNNNNNTGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	121, 174, 525
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	341, 377
Csp6I	GTAC	2 cut(s)	256, 403
CviAII	CATG	1 cut(s)	430
CviJI	RGCY	5 cut(s)	92, 103, 152, 203, 378
CviKI_1	RGCY	5 cut(s)	92, 103, 152, 203, 378
CviQI	GTAC	2 cut(s)	256, 403
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EciI	GGCGGA	2 cut(s)	387, 518
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	2 cut(s)	379, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	1 cut(s)	433
FaiI	YATR	4 cut(s)	8, 95, 112, 431
FaqI	GGGAC	2 cut(s)	354, 531
FatI	CATG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	517
FokI	GGATG	3 cut(s)	128, 181, 512
GlaI	GCGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	223, 427, 533
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	3 cut(s)	155, 324, 473
HpyAV	CCTTC	3 cut(s)	131, 326, 457
HpyCH4V	TGCA	1 cut(s)	433
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	2 cut(s)	100, 261
LpnPI	CCDG	9 cut(s)	192, 244, 256, 290, 312, 357, 378, 405, 486
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	139, 211, 493
MluCI	AATT	4 cut(s)	36, 54, 82, 311
MnlI	CCTC	2 cut(s)	159, 368
MseI	TTAA	3 cut(s)	53, 57, 206
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	3 cut(s)	102, 342, 348
NmuCI	GTSAC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	330
PacI	TTAATTAA	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	102, 342, 348
PspPI	GGNCC	2 cut(s)	341, 377
RsaI	GTAC	2 cut(s)	257, 404
RsaNI	GTAC	2 cut(s)	256, 403
SaqAI	TTAA	3 cut(s)	53, 57, 206
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	341, 377
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	7 cut(s)	123, 154, 181, 205, 352, 452, 468
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	36, 54, 82, 311
SsiI	CCGC	3 cut(s)	372, 510, 529
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	513
TaqI	TCGA	2 cut(s)	315, 330
TasI	AATT	4 cut(s)	36, 54, 82, 311
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	53, 57, 206
Tru9I	TTAA	3 cut(s)	53, 57, 206
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	146, 418, 527
TspGWI	ACGGA	2 cut(s)	309, 354
TspRI	CASTG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	2 cut(s)	82, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.