Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Reverse (-)

8507535 .. 8508457

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1116400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGGTCCTAAGCGCAAAAGCACCAGGGGACTTGTTGAACTGGGATGACCTACAGAAGATGAAATACTCATGGAACGTAGCTCAGGAAGTTCTCAGATTGGCTCCACCTCTTCAAGGAGCTTTCAGGGAAGCCTTATCTGACTTTGTCTTCAATGGTTTCACCATTCCAAAAGGCTGGAAGTTGTATTGGAGTGCAAATTCAACACACAAGAACGCAGCTTACTTCCCGGAACCATTCAAATTCGACCCTACAAGATTCGAAGGAAATGGTCCAGCACCATACACGTTTGTGCCCTTTGGAGGAGGTCCTAGGATGTGCCCCGGCAAAGAGTACGCCCGATTGGAAATCCTAGTGTTCATGCACAACTTGGTGAAGAGGTTCAAATGGGAAAAAGTTCTTCCCGACGAGCAGATCGTAGTTGACCCACTGCCCATGCCCGCCAAGGGACTCCCCGTCCGCCTTTTCCCTCACCCTAAGACAGCCACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

9.19

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	11 - 132	4.7e-37	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	441, 460
AcsI	RAATTY	2 cut(s)	199, 242
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	116, 302, 446
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	40, 116, 154, 204, 241, 385
AhdI	GACNNNNNGTC	1 cut(s)	455
AjnI	CCWGG	1 cut(s)	25
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	3 cut(s)	83, 122, 221
AluI	AGCT	3 cut(s)	83, 122, 221
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	199, 242
Asp700I	GAANNNNTTC	2 cut(s)	380, 396
AspA2I	CCTAGG	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	7, 272, 308
AsuC2I	CCSGG	2 cut(s)	230, 324
AsuHPI	GGTGA	3 cut(s)	154, 385, 464
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	3 cut(s)	7, 272, 308
AvrII	CCTAGG	1 cut(s)	311
BaeGI	GKGCMC	2 cut(s)	297, 323
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	230, 324
BfaI	CTAG	2 cut(s)	312, 353
BfmI	CTRYAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	219
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	27, 230, 324
Bme18I	GGWCC	3 cut(s)	7, 272, 308
BmeRI	GACNNNNNGTC	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	7, 272, 308
BmiI	GGNNCC	2 cut(s)	105, 234
BmrFI	CCNGG	3 cut(s)	27, 230, 324
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	2 cut(s)	11, 84
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	230, 324
BsaJI	CCNNGG	4 cut(s)	26, 311, 322, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 302, 446
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	26, 311, 322, 444
BseGI	GGATG	2 cut(s)	52, 321
BseLI	CCNNNNNNNGG	3 cut(s)	116, 302, 446
BseMII	CTCAG	2 cut(s)	98, 109
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	318
BseSI	GKGCMC	2 cut(s)	297, 323
BseXI	GCAGC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	230, 324
BslFI	GGGAC	2 cut(s)	44, 462
BslI	CCNNNNNNNGG	3 cut(s)	116, 302, 446
BsmFI	GGGAC	2 cut(s)	44, 462
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	297, 323
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	441, 460
BspCNI	CTCAG	2 cut(s)	97, 108
BspLI	GGNNCC	2 cut(s)	105, 234
BspT104I	TTCGAA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	4 cut(s)	26, 311, 322, 444
BssMI	GATC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	311, 444
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	2 cut(s)	117, 371
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	11, 84, 95, 477
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	52, 321
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	3 cut(s)	25, 228, 322
BstSFI	CTRYAG	1 cut(s)	53
BstSLI	GKGCMC	2 cut(s)	297, 323
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	52, 321
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	3 cut(s)	7, 272, 308
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	72, 361, 436
CviJI	RGCY	7 cut(s)	83, 104, 122, 134, 177, 221, 485
CviKI_1	RGCY	7 cut(s)	83, 104, 122, 134, 177, 221, 485
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	11, 84, 95, 477
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
DriI	GACNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	117, 371
Eam1105I	GACNNNNNGTC	1 cut(s)	455
EarI	CTCTTC	2 cut(s)	117, 371
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	311, 444
Eco47I	GGWCC	3 cut(s)	7, 272, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	7, 308
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	311, 444
ErhI	CCWWGG	2 cut(s)	311, 444
FaeI	CATG	3 cut(s)	75, 364, 439
FaiI	YATR	4 cut(s)	73, 283, 362, 437
FaqI	GGGAC	2 cut(s)	44, 462
FatI	CATG	3 cut(s)	71, 360, 435
FauI	CCCGC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	59, 328
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	312, 353
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	2 cut(s)	230, 324
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	75, 364, 439
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	258, 450
HpaII	CCGG	2 cut(s)	230, 324
HphI	GGTGA	3 cut(s)	154, 385, 464
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	98, 142
Hpy188III	TCNNGA	2 cut(s)	86, 404
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	78, 287
HpyCH4V	TGCA	2 cut(s)	197, 364
HpyF3I	CTNAG	4 cut(s)	11, 84, 95, 477
HpySE526I	ACGT	2 cut(s)	78, 287
Hsp92II	CATG	3 cut(s)	75, 364, 439
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	109, 119
LpnPI	CCDG	9 cut(s)	12, 28, 39, 71, 112, 163, 243, 288, 337
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	312, 353
MaeII	ACGT	2 cut(s)	78, 287
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	5 cut(s)	70, 104, 142, 388, 392
MhlI	GDGCHC	2 cut(s)	297, 323
MluCI	AATT	2 cut(s)	199, 242
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	5 cut(s)	120, 296, 299, 372, 480
MroXI	GAANNNNTTC	2 cut(s)	380, 396
MseI	TTAA	1 cut(s)	493
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	2 cut(s)	230, 324
MspR9I	CCNGG	3 cut(s)	27, 230, 324
MvaI	CCWGG	1 cut(s)	27
NciI	CCSGG	2 cut(s)	230, 324
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	3 cut(s)	75, 364, 439
NlaIV	GGNNCC	2 cut(s)	105, 234
NspV	TTCGAA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PdmI	GAANNNNTTC	2 cut(s)	380, 396
PfeI	GAWTC	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PpuMI	RGGWCCY	2 cut(s)	7, 308
Psp5II	RGGWCCY	2 cut(s)	7, 308
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	105, 234
PspPI	GGNCC	3 cut(s)	7, 272, 308
PspPPI	RGGWCCY	2 cut(s)	7, 308
PsrI	GAACNNNNNNTAC	2 cut(s)	206, 238
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	493
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	3 cut(s)	7, 272, 308
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	3 cut(s)	27, 230, 324
SduI	GDGCHC	2 cut(s)	297, 323
SfcI	CTRYAG	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	3 cut(s)	7, 272, 308
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	199, 242
SsiI	CCGC	2 cut(s)	441, 460
SspMI	CTAG	2 cut(s)	312, 353
StyD4I	CCNGG	3 cut(s)	25, 228, 322
StyI	CCWWGG	2 cut(s)	311, 444
TaiI	ACGT	2 cut(s)	81, 290
TaqI	TCGA	2 cut(s)	246, 261
TasI	AATT	2 cut(s)	199, 242
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	493
Tru9I	TTAA	1 cut(s)	493
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	77, 349
TspRI	CASTG	1 cut(s)	435
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	7, 272, 308
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	2 cut(s)	199, 242
XmaJI	CCTAGG	1 cut(s)	311
XmnI	GAANNNNTTC	2 cut(s)	380, 396
XspI	CTAG	2 cut(s)	312, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.