pycom10g20130

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000192
Physical Location & Seq
Reverse (-)
23095636 .. 23096373
738 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g20130.1

Sequence Viewer

Length: 450 bp
ATGGACATTGCAAACTCCAAGAAGCCAGGATACTTTTTGGAATGGGAAGACATCAACAAAATGAAGTACTCATGGAATGTGTTGTATGAAGTGATGAGATTCACTCCACCACTTCAAGGGACATTCAGAGAGGCCTTGACTGATTTTAGCTATGTATATTGGACTGTTAGCACAACAAACATGAACCTAGAGTACTTTCCCAATCCAGAAAAATTTGACCCATCAAGATATGATGACCTAAATGCATTCCCAGCTTTCACATTCGTTCCATTTGGAGGAGGGCCAAGAATGTGCCCGGGCAAAGAGTACGCTCGCCTAGCAATCCTCACTTTCGTTCACAACGTGGTCAAGAGGTTCAAATGGGAAGTGTTATTTCCCAAGGAGAAGATCACGGATGACATGATGCCAACACCGGAGAAAGGACTTCCAGTTCGCCTTACCCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

150

Amino Acids

17.63

Weight (kDa)

8.61

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 125 8.3e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 3 cut(s) 68, 194, 308
AfiI CCNNNNNNNGG 3 cut(s) 116, 275, 419
AgsI TTSAA 2 cut(s) 116, 358
AjnI CCWGG 1 cut(s) 25
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 2 cut(s) 150, 254
AluI AGCT 2 cut(s) 150, 254
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 2 cut(s) 132, 281
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 2 cut(s) 296, 297
AvaI CYCGRG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 54
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 23
BcnI CCSGG 2 cut(s) 296, 297
BfaI CTAG 3 cut(s) 188, 317, 448
BfuI GTATCC 1 cut(s) 23
BmcAI AGTACT 2 cut(s) 68, 194
Bme1390I CCNGG 3 cut(s) 27, 296, 297
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 281
BmrFI CCNGG 3 cut(s) 27, 296, 297
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpuMI CCSGG 2 cut(s) 296, 297
BsaJI CCNNGG 2 cut(s) 295, 378
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 275, 419
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 295, 378
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 116, 275, 419
BseMI GCAATG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 134, 283
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 296, 413
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 116, 275, 419
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 134, 283
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 387
BspANI GGCC 2 cut(s) 134, 283
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 295, 378
BssMI GATC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 390
BstMBI GATC 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 251, 317
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 3 cut(s) 25, 294, 295
BstSLI GKGCMC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 54
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 2 cut(s) 134, 283
BtsCI GGATG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 281
Cfr9I CCCGGG 1 cut(s) 295
Csp6I GTAC 3 cut(s) 67, 193, 307
CviAII CATG 3 cut(s) 72, 181, 400
CviJI RGCY 5 cut(s) 25, 134, 150, 254, 283
CviKI_1 RGCY 5 cut(s) 25, 134, 150, 254, 283
CviQI GTAC 3 cut(s) 67, 193, 307
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
DraIII CACNNNGTG 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 75, 184, 403
FaiI YATR 7 cut(s) 73, 87, 153, 157, 182, 231, 401
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 71, 180, 399
FokI GGATG 1 cut(s) 407
FspBI CTAG 3 cut(s) 188, 317, 448
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 134, 283
HapII CCGG 2 cut(s) 296, 413
Hin1II CATG 3 cut(s) 75, 184, 403
HinfI GANTC 1 cut(s) 99
HpaII CCGG 2 cut(s) 296, 413
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 206, 225, 349
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 1 cut(s) 447
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 11, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 317
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 3 cut(s) 75, 184, 403
Kzo9I GATC 1 cut(s) 387
LpnPI CCDG 7 cut(s) 12, 39, 219, 264, 309, 426, 441
LweI GCATC 1 cut(s) 393
MaeI CTAG 3 cut(s) 188, 317, 448
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 2 cut(s) 59, 397
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 1 cut(s) 212
MnlI CCTC 5 cut(s) 124, 269, 272, 335, 345
Mph1103I ATGCAT 1 cut(s) 247
MspI CCGG 2 cut(s) 296, 413
MspR9I CCNGG 3 cut(s) 27, 296, 297
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 251, 317
NciI CCSGG 2 cut(s) 296, 297
NdeII GATC 1 cut(s) 387
NlaIII CATG 3 cut(s) 75, 184, 403
NsiI ATGCAT 1 cut(s) 247
PceI AGGCCT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 439
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 281
PsrI GAACNNNNNNTAC 2 cut(s) 176, 208
RsaI GTAC 3 cut(s) 68, 194, 308
RsaNI GTAC 3 cut(s) 67, 193, 307
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 281
ScaI AGTACT 2 cut(s) 68, 194
ScrFI CCNGG 3 cut(s) 27, 296, 297
SduI GDGCHC 1 cut(s) 296
SetI ASST 6 cut(s) 152, 189, 240, 256, 345, 356
SfaNI GCATC 1 cut(s) 393
SmaI CCCGGG 1 cut(s) 297
SrfI GCCCGGGC 1 cut(s) 297
Sse9I AATT 1 cut(s) 212
SseBI AGGCCT 1 cut(s) 134
SspMI CTAG 3 cut(s) 188, 317, 448
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 25, 294, 295
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 345
TasI AATT 1 cut(s) 212
TatI WGTACW 2 cut(s) 66, 192
TfiI GAWTC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 77, 102, 197
TspGWI ACGGA 1 cut(s) 407
TspMI CCCGGG 1 cut(s) 295
XapI RAATTY 1 cut(s) 212
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 3 cut(s) 188, 317, 448
ZrmI AGTACT 2 cut(s) 68, 194
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.