Rmu_sc0020285.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020285.1
OG0000192
Physical Location & Seq
Forward (+)
506 .. 1108
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020285.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atggagatagcagattcaaaagcagaaggagagttgctcaactgggaggacatacaaaaaatgaaatacacatggaatgtcgcatgtgaagtgttgagattggagccgccaaatcctggaacttttagagaggccatgaccgactttgtctatgaaggatatctgattcctaaaggaatgaagttatactggagtgtgttttcgacacataaaaacccagagtacttcccagatccgaaaaagtttgacccatcaaggttcgacggaggaggaccagctcctttttcgtacgtcccatttggaggaggacctcggatgtgccctggaagagaatatgctcgctttacgattttggttttcatgcataacttggtcaccagattcaggtgggagaaggtttttcctaacgagaaaatggtgatgaccccatttcttcttcctaccaaaggacttccagttcgcctttatcctcatccatcaacatcatcactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

164

Amino Acids

18.99

Weight (kDa)

8.49

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 227
AfaI GTAC 2 cut(s) 224, 290
AfiI CCNNNNNNNGG 4 cut(s) 116, 302, 384, 446
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 115, 322
AloI GAACNNNNNNTCC 2 cut(s) 441, 473
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AspS9I GGNCC 2 cut(s) 272, 308
AsuHPI GGTGA 2 cut(s) 367, 430
AvaII GGWCC 2 cut(s) 272, 308
BaeGI GKGCMC 1 cut(s) 323
BccI CCATC 2 cut(s) 259, 484
BciT130I CCWGG 2 cut(s) 117, 324
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 117, 324
Bme18I GGWCC 2 cut(s) 272, 308
BmgT120I GGNCC 2 cut(s) 272, 308
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 2 cut(s) 117, 324
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 311, 322
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 302, 384, 446
Bse1I ACTGG 3 cut(s) 47, 194, 455
BseBI CCWGG 2 cut(s) 117, 324
BseDI CCNNGG 2 cut(s) 311, 322
BseGI GGATG 2 cut(s) 321, 472
BseLI CCNNNNNNNGG 4 cut(s) 116, 302, 384, 446
BseNI ACTGG 3 cut(s) 47, 194, 455
BseRI GAGGAG 2 cut(s) 282, 318
BseSI GKGCMC 1 cut(s) 323
BshFI GGCC 1 cut(s) 134
BsiWI CGTACG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 4 cut(s) 116, 302, 384, 446
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 227
BsrI ACTGG 3 cut(s) 47, 194, 455
BssECI CCNNGG 2 cut(s) 311, 322
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 2 cut(s) 117, 324
Bst4CI ACNGT 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 340
BstEII GGTNACC 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 321, 472
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstNI CCWGG 2 cut(s) 117, 324
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 115, 322
BstSLI GKGCMC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 321, 472
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 272, 308
Csp6I GTAC 2 cut(s) 223, 289
CviAII CATG 4 cut(s) 72, 84, 136, 361
CviJI RGCY 3 cut(s) 106, 134, 278
CviKI_1 RGCY 3 cut(s) 106, 134, 278
CviQI GTAC 2 cut(s) 223, 289
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 272, 308
Eco91I GGTNACC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 115, 322
EcoRV GATATC 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 366
FaeI CATG 4 cut(s) 75, 87, 139, 364
FaqI GGGAC 1 cut(s) 278
FatI CATG 4 cut(s) 71, 83, 135, 360
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 2 cut(s) 328, 459
Fsp4HI GCNGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 4 cut(s) 75, 87, 139, 364
HinfI GANTC 3 cut(s) 14, 166, 381
HphI GGTGA 2 cut(s) 367, 430
Hpy188I TCNGA 3 cut(s) 165, 237, 315
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 20, 149, 388
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 364
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 75, 87, 139, 364
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 103, 283
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 339, 425, 428
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 323
MnlI CCTC 8 cut(s) 40, 124, 260, 263, 296, 299, 321, 480
Mph1103I ATGCAT 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 490
MspR9I CCNGG 2 cut(s) 117, 324
MvaI CCWGG 2 cut(s) 117, 324
NdeII GATC 1 cut(s) 232
NlaIII CATG 4 cut(s) 75, 87, 139, 364
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 366
NspI RCATGY 1 cut(s) 87
PfeI GAWTC 3 cut(s) 14, 166, 381
Pfl23II CGTACG 1 cut(s) 288
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 115, 322
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 115, 322
PspLI CGTACG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 2 cut(s) 272, 308
PspPPI RGGWCCY 1 cut(s) 308
PsuI RGATCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 224, 290
RsaNI GTAC 2 cut(s) 223, 289
RseI CAYNNNNRTG 1 cut(s) 490
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 272, 308
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 117, 324
SduI GDGCHC 1 cut(s) 323
SetI ASST 6 cut(s) 260, 280, 294, 313, 389, 399
SinI GGWCC 2 cut(s) 272, 308
SmiMI CAYNNNNRTG 1 cut(s) 490
SsiI CCGC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 115, 322
TaaI ACNGT 1 cut(s) 492
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 203, 261
TaqII GACCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 3 cut(s) 14, 166, 381
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 77, 168, 194, 349
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 495
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 272, 308
XagI CCTNNNNNAGG 1 cut(s) 444
XceI RCATGY 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.