Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004135.1

Orthogroup ID

OG0000192

Physical Location & Seq

Genomic Coordinates Forward (+)

90983 .. 93036

Gene Structure 2054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004135.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgtctccgaaaaatggccggaaaagtcgccggaaaatcattgaccggcgggatgacgtggcagtgggtccttctgctgacgtggcagtgctgatgtggcagtgggtccctatgctgacgtggcacagatcccagttcaccggcaacgacctccccccaggaagagtcggttacccggtgatcggggagacctacgagttcctctcttcggcccgaaaaggccaccccgaaaaatttatctccgaccgggtaaacaagtactcgtctcaaattttcaagacctccttgattggggagaaaactgccttcttctgcggcaacacctgcaacaagttcttgttctccaaggagaacaagtttgtgactgtatggtggcctagtactgtcgacaagatcttcccttcttcgactgagacttcgtcgtccgtagaagagggcaggaagatgagaaagatgcttcctaacttcttgaagctcgacgctctgcaacgctactttaacaccatggaccagtgtgctcaatcacacttcgctgactgctgggaaaaccaaaacgaagttaaagtatttcccctcgtcaaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

195

Amino Acids

22.53

Weight (kDa)

9.39

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca	FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica	MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica	Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis	pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis	RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata	RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora	Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa	Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha	Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana	Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	49, 315
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	233, 270
AfaI	GTAC	2 cut(s)	260, 382
AfiI	CCNNNNNNNGG	5 cut(s)	14, 182, 208, 291, 580
AgsI	TTSAA	2 cut(s)	277, 472
AjiI	CACGTC	3 cut(s)	58, 82, 120
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	4 cut(s)	9, 182, 270, 407
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	4 cut(s)	16, 210, 220, 374
ApoI	RAATTY	2 cut(s)	233, 270
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AspS9I	GGNCC	4 cut(s)	68, 106, 211, 508
AsuC2I	CCSGG	2 cut(s)	176, 248
AsuHPI	GGTGA	2 cut(s)	130, 190
AvaII	GGWCC	3 cut(s)	68, 106, 508
Bbv12I	GWGCWC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	176, 248
BcoDI	GTCTC	4 cut(s)	9, 182, 270, 407
BfaI	CTAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
BmcAI	AGTACT	2 cut(s)	260, 382
Bme1390I	CCNGG	3 cut(s)	159, 176, 248
Bme18I	GGWCC	3 cut(s)	68, 106, 508
BmgBI	CACGTC	3 cut(s)	58, 82, 120
BmgT120I	GGNCC	4 cut(s)	68, 106, 211, 508
BmiI	GGNNCC	3 cut(s)	69, 107, 108
BmrFI	CCNGG	3 cut(s)	159, 176, 248
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpuMI	CCSGG	2 cut(s)	176, 248
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	157, 345, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 182, 208, 291, 580
Bse118I	RCCGGY	2 cut(s)	45, 140
Bse1I	ACTGG	2 cut(s)	133, 511
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	157, 345, 504
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	5 cut(s)	14, 182, 208, 291, 580
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	133, 511
BseYI	CCCAGC	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	18, 212, 222, 376
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	6 cut(s)	19, 31, 46, 141, 176, 247
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	5 cut(s)	14, 182, 208, 291, 580
BsmAI	GTCTC	4 cut(s)	9, 182, 270, 407
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	18, 212, 222, 376
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	128, 180, 393
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	49, 315
BspANI	GGCC	4 cut(s)	18, 212, 222, 376
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	69, 107, 108
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	2 cut(s)	45, 140
BsrI	ACTGG	2 cut(s)	133, 511
BssAI	RCCGGY	2 cut(s)	45, 140
BssECI	CCNNGG	3 cut(s)	157, 345, 504
BssMI	GATC	3 cut(s)	128, 180, 393
BssT1I	CCWWGG	2 cut(s)	345, 504
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	367, 385
Bst6I	CTCTTC	3 cut(s)	157, 211, 426
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	504
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	3 cut(s)	131, 183, 396
BstMAI	GTCTC	4 cut(s)	9, 182, 270, 407
BstMBI	GATC	3 cut(s)	128, 180, 393
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 97, 121, 324
BstNI	CCWGG	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	157, 174, 246
BstX2I	RGATCY	2 cut(s)	128, 393
BstYI	RGATCY	2 cut(s)	128, 393
BsuRI	GGCC	4 cut(s)	18, 212, 222, 376
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	3 cut(s)	58, 82, 120
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	3 cut(s)	69, 93, 107
BtsIMutI	CAGTG	4 cut(s)	69, 93, 107, 518
BveI	ACCTGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	45, 140
Cfr13I	GGNCC	4 cut(s)	68, 106, 211, 508
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	259, 381
CviAII	CATG	1 cut(s)	505
CviJI	RGCY	5 cut(s)	18, 212, 222, 376, 475
CviKI_1	RGCY	5 cut(s)	18, 212, 222, 376, 475
CviQI	GTAC	2 cut(s)	259, 381
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	130, 182, 395
DpnII	GATC	3 cut(s)	128, 180, 393
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	3 cut(s)	157, 211, 426
EarI	CTCTTC	3 cut(s)	157, 211, 426
Eco130I	CCWWGG	2 cut(s)	345, 504
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	3 cut(s)	68, 106, 508
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	68, 106
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	345, 504
ErhI	CCWWGG	2 cut(s)	345, 504
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	508
FaiI	YATR	3 cut(s)	113, 370, 506
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	316
GsaI	CCCAGC	1 cut(s)	544
HaeIII	GGCC	4 cut(s)	18, 212, 222, 376
HapII	CCGG	6 cut(s)	19, 31, 46, 141, 176, 247
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	6 cut(s)	19, 31, 46, 141, 176, 247
HphI	GGTGA	2 cut(s)	130, 190
Hpy166II	GTNNAC	3 cut(s)	138, 253, 388
Hpy188I	TCNGA	2 cut(s)	9, 244
Hpy188III	TCNNGA	2 cut(s)	277, 469
Hpy8I	GTNNAC	3 cut(s)	138, 253, 388
Hpy99I	CGWCG	2 cut(s)	424, 482
HpyAV	CCTTC	3 cut(s)	81, 316, 411
HpyCH4III	ACNGT	2 cut(s)	367, 385
HpyCH4IV	ACGT	3 cut(s)	57, 81, 119
HpyCH4V	TGCA	2 cut(s)	327, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 97, 121, 324
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	3 cut(s)	57, 81, 119
Hsp92II	CATG	1 cut(s)	508
KflI	GGGWCCC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	128, 180, 393
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	57, 81, 119
MaeIII	GTNAC	2 cut(s)	170, 361
MalI	GATC	3 cut(s)	130, 182, 395
MboI	GATC	3 cut(s)	128, 180, 393
MboII	GAAGA	7 cut(s)	174, 198, 301, 388, 396, 443, 454
MflI	RGATCY	2 cut(s)	128, 393
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	2 cut(s)	233, 270
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	161, 212, 292, 427, 584
MseI	TTAA	2 cut(s)	498, 561
MspI	CCGG	6 cut(s)	19, 31, 46, 141, 176, 247
MspR9I	CCNGG	3 cut(s)	159, 176, 248
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	83, 97, 121, 324
NciI	CCSGG	2 cut(s)	176, 248
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	128, 180, 393
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	3 cut(s)	69, 107, 108
NmuCI	GTSAC	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	2 cut(s)	68, 106
Psp5II	RGGWCCY	2 cut(s)	68, 106
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	69, 107, 108
PspPI	GGNCC	4 cut(s)	68, 106, 211, 508
PspPPI	RGGWCCY	2 cut(s)	68, 106
PsuI	RGATCY	2 cut(s)	128, 393
PsyI	GACNNNGTC	1 cut(s)	418
RsaI	GTAC	2 cut(s)	260, 382
RsaNI	GTAC	2 cut(s)	259, 381
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	498, 561
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	3 cut(s)	128, 180, 393
Sau96I	GGNCC	4 cut(s)	68, 106, 211, 508
ScaI	AGTACT	2 cut(s)	260, 382
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	3 cut(s)	159, 176, 248
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	8 cut(s)	60, 84, 122, 153, 194, 284, 326, 477
SfaNI	GCATC	1 cut(s)	444
SinI	GGWCC	3 cut(s)	68, 106, 508
Sse9I	AATT	2 cut(s)	233, 270
SsiI	CCGC	2 cut(s)	49, 315
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	157, 174, 246
StyI	CCWWGG	2 cut(s)	345, 504
TaaI	ACNGT	2 cut(s)	367, 385
TaiI	ACGT	3 cut(s)	60, 84, 122
TaqI	TCGA	3 cut(s)	387, 407, 477
TasI	AATT	2 cut(s)	233, 270
TatI	WGTACW	2 cut(s)	258, 380
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	498, 561
Tru9I	TTAA	2 cut(s)	498, 561
TscAI	CASTG	4 cut(s)	69, 93, 107, 518
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	4 cut(s)	69, 93, 107, 518
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	3 cut(s)	68, 106, 508
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	2 cut(s)	233, 270
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	2 cut(s)	260, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.