FvH4_7g12560

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000192
Physical Location & Seq
Forward (+)
11374819 .. 11375451
633 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12560.t1

Sequence Viewer

Length: 633 bp
ATGGAAACTACTGCGTTCTTCATTTCTCTGCTAGTTCCCTTTGCTGCTCTCTACTATTTCTACTGTAAAATTATTCCTAGCCCCAGGCAACAAGTAGCAGGTTATCAACTGCCGCCAGGAAGCACAGGTTGGCCCATCATTGGTGAAACACTCGAGTATCTACGCACAGCCAGAAACGGTGTCCCTGAAAAGTCTGTGGCAGACCGAAGGAGAAAGTACTCTGATGGCTCGTGCAAGGTGTTCAAGACATCGTTGCTCGGCGAACCTATGGCCATGCTGTGCACCGCAGCTGGAAACAAGTTCTTGTTTTCGAACGAGAACAAATTGGTCAAGACCTGGTGGCCTGCTATCTTCGAGAAGTTGTTTTCGAACACTGAAAAAATAGACTACTCCAAACAGGCCGTCCGAAATCGCAAAGACATATTTCCATTTCTCAAACCTGACGCTGTTCGAATACATGTACGCGTGATGGATCAGGTCACCAAACGCCATTTCGATACGTATTGGTCGTCTCTGGATCAAGAACAAGTGGTCAAATTTCACTCACTAGCAAAAAAGTACACCTTATCATTATCTTGCAGACTCTTCTTAAACATCGAGGATCCGCAGGTGATCGCCAAGCTAGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

211

Amino Acids

24.26

Weight (kDa)

9.51

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 598
Acc36I ACCTGC 2 cut(s) 89, 598
AccII CGCG 1 cut(s) 465
AciI CCGC 3 cut(s) 113, 285, 605
AclWI GGATC 4 cut(s) 480, 525, 596, 609
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 536
AfaI GTAC 3 cut(s) 218, 462, 560
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 2 cut(s) 457, 463
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 3 cut(s) 83, 115, 335
AjuI GAANNNNNNNTTGG 4 cut(s) 112, 144, 476, 508
AluBI AGCT 2 cut(s) 290, 622
AluI AGCT 2 cut(s) 290, 622
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 516
Alw44I GTGCAC 1 cut(s) 280
AlwI GGATC 4 cut(s) 480, 525, 596, 609
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 131, 270, 341, 399
ApaLI GTGCAC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 44, 287
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 155, 472, 622
AsuII TTCGAA 3 cut(s) 311, 368, 451
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 140, 173
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 601
BauI CACGAG 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 31, 299
BccI CCATC 3 cut(s) 143, 218, 463
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 3 cut(s) 85, 117, 337
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 4 cut(s) 32, 78, 548, 623
BfuAI ACCTGC 2 cut(s) 89, 598
BisI GCNGC 3 cut(s) 45, 113, 288
BlsI GCNGC 3 cut(s) 46, 114, 289
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 85, 117, 337
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 3 cut(s) 85, 117, 337
Bpu14I TTCGAA 3 cut(s) 311, 368, 451
BsaAI YACGTR 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 85, 117, 337
BseDI CCNNGG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 31, 299
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 4 cut(s) 133, 272, 343, 401
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 4 cut(s) 133, 272, 343, 401
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 3 cut(s) 311, 368, 451
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 4 cut(s) 472, 517, 601, 612
BspACI CCGC 3 cut(s) 113, 285, 605
BspANI GGCC 4 cut(s) 133, 272, 343, 401
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 603
BspMI ACCTGC 2 cut(s) 89, 598
BspPI GGATC 4 cut(s) 480, 525, 596, 609
BspT104I TTCGAA 3 cut(s) 311, 368, 451
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 4 cut(s) 472, 517, 601, 612
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 3 cut(s) 85, 117, 337
Bst4CI ACNGT 2 cut(s) 65, 179
Bst6I CTCTTC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 501
BstBI TTCGAA 3 cut(s) 311, 368, 451
BstC8I GCNNGC 1 cut(s) 345
BstEII GGTNACC 1 cut(s) 478
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 4 cut(s) 475, 520, 604, 615
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 4 cut(s) 472, 517, 601, 612
BstNI CCWGG 3 cut(s) 85, 117, 337
BstNSI RCATGY 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 83, 115, 335
BstSLI GKGCMC 1 cut(s) 284
BstSNI TACGTA 1 cut(s) 501
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 31, 299
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 4 cut(s) 133, 272, 343, 401
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 2 cut(s) 89, 598
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 335
Csp6I GTAC 3 cut(s) 217, 461, 559
CviAII CATG 2 cut(s) 274, 458
CviJI RGCY 9 cut(s) 81, 133, 170, 228, 272, 290, 343, 401, 622
CviKI_1 RGCY 9 cut(s) 81, 133, 170, 228, 272, 290, 343, 401, 622
CviQI GTAC 3 cut(s) 217, 461, 559
DpnI GATC 4 cut(s) 474, 519, 603, 614
DpnII GATC 4 cut(s) 472, 517, 601, 612
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Eco105I TACGTA 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 478
EcoRII CCWGG 3 cut(s) 83, 115, 335
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 2 cut(s) 277, 461
FaiI YATR 4 cut(s) 269, 275, 422, 459
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 273, 457
Fnu4HI GCNGC 3 cut(s) 45, 113, 288
Fsp4HI GCNGC 3 cut(s) 45, 113, 288
FspBI CTAG 4 cut(s) 32, 78, 548, 623
GluI GCNGC 3 cut(s) 45, 113, 288
HaeIII GGCC 4 cut(s) 133, 272, 343, 401
HgaI GACGC 1 cut(s) 452
Hin1II CATG 2 cut(s) 277, 461
HinfI GANTC 1 cut(s) 582
HphI GGTGA 3 cut(s) 155, 472, 622
Hpy166II GTNNAC 2 cut(s) 282, 561
Hpy188I TCNGA 2 cut(s) 223, 407
Hpy188III TCNNGA 5 cut(s) 244, 331, 355, 515, 521
Hpy8I GTNNAC 2 cut(s) 282, 561
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 65, 179
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 3 cut(s) 234, 282, 579
HpySE526I ACGT 1 cut(s) 500
Hsp92II CATG 2 cut(s) 277, 461
Kzo9I GATC 4 cut(s) 472, 517, 601, 612
Lsp1109I GCAGC 2 cut(s) 31, 299
MabI ACCWGGT 1 cut(s) 335
MaeI CTAG 4 cut(s) 32, 78, 548, 623
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 478
MalI GATC 4 cut(s) 474, 519, 603, 614
MboI GATC 4 cut(s) 472, 517, 601, 612
MboII GAAGA 3 cut(s) 10, 343, 577
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 3 cut(s) 69, 323, 536
MluI ACGCGT 1 cut(s) 463
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 576
MnlI CCTC 1 cut(s) 592
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 3 cut(s) 85, 117, 337
MvaI CCWGG 3 cut(s) 85, 117, 337
MvnI CGCG 1 cut(s) 465
NdeII GATC 4 cut(s) 472, 517, 601, 612
NlaIII CATG 2 cut(s) 277, 461
NlaIV GGNNCC 1 cut(s) 603
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 461
NspV TTCGAA 3 cut(s) 311, 368, 451
PaeR7I CTCGAG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 598
PciI ACATGT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PkrI GCNGC 3 cut(s) 46, 114, 289
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 501
PscI ACATGT 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 83, 115, 335
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 3 cut(s) 83, 115, 335
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 3 cut(s) 218, 462, 560
RsaNI GTAC 3 cut(s) 217, 461, 559
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 3 cut(s) 45, 113, 288
Sau3AI GATC 4 cut(s) 472, 517, 601, 612
Sau96I GGNCC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 3 cut(s) 85, 117, 337
SduI GDGCHC 1 cut(s) 284
SexAI ACCWGGT 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 152
SfuI TTCGAA 3 cut(s) 311, 368, 451
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 501
Sse9I AATT 3 cut(s) 69, 323, 536
SsiI CCGC 3 cut(s) 113, 285, 605
SspMI CTAG 4 cut(s) 32, 78, 548, 623
StyD4I CCNGG 3 cut(s) 83, 115, 335
TaaI ACNGT 2 cut(s) 65, 179
TaiI ACGT 1 cut(s) 503
TaqI TCGA 7 cut(s) 153, 311, 354, 368, 451, 495, 597
TaqII GACCGA 1 cut(s) 219
TasI AATT 3 cut(s) 69, 323, 536
TatI WGTACW 2 cut(s) 216, 558
TauI GCSGC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 44, 287
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 1 cut(s) 379
VneI GTGCAC 1 cut(s) 280
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 4 cut(s) 32, 78, 548, 623
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.