Rh7DG004600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000192
Physical Location & Seq
Reverse (-)
380527 .. 382187
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG004600.1

Sequence Viewer

Length: 444 bp
ATGCACACCTTCACATTGGTGTGTAAAATCTTCTTAAACGTGGAGGATCTAGCAGTGATTGCCAAACTAGAGGAGCCAATTCAGCATATTGCAGCAGGCTTCATTTCATTGCCCATAAATCTGCCTGGCACAGCATTCAACCGAGCCATCCAAGCATCCAAGCAGGTCAGGAAGGACCTTGAAAATATGGTTAAACAGAGGAGAATAGATTTAGATATGTCTGTGGCAGCAGATGAAAATAATAATAATAATCATGATTTGATGTCTAAGTTGCTGCTGGAGAGATATAGCGACGGCCAACAAATGAAGGAAACCGACATCGCCAACAAGTTAAATGGTCTACTCATTGCTGCTTATGACAATGTATTCATCACCTTGTGTTCTATCATCATGTATCTATCGGAGCTTCCTACAGTTTATGATGCCGTCCTTAAAGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

147

Amino Acids

16.51

Weight (kDa)

5.3

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 143 1.2e-08 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 340
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 378
AgsI TTSAA 2 cut(s) 139, 182
AjnI CCWGG 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 4 cut(s) 92, 227, 274, 350
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 175
BbvI GCAGC 4 cut(s) 104, 239, 261, 337
BccI CCATC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 310, 410
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 2 cut(s) 50, 68
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 4 cut(s) 93, 228, 275, 351
BlsI GCNGC 4 cut(s) 94, 229, 276, 352
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 164, 412
BpmI CTGGAG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 107, 345
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 147, 155
BseMI GCAATG 2 cut(s) 107, 345
BseRI GAGGAG 2 cut(s) 86, 214
BseXI GCAGC 4 cut(s) 104, 239, 261, 337
BshFI GGCC 1 cut(s) 297
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 297
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 107, 345
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 415
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 147, 155
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 59, 82, 152
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 4 cut(s) 104, 239, 261, 337
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 147, 155
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 175
CviAII CATG 2 cut(s) 254, 391
CviJI RGCY 5 cut(s) 76, 99, 146, 297, 406
CviKI_1 RGCY 5 cut(s) 76, 99, 146, 297, 406
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 257, 394
FaiI YATR 9 cut(s) 87, 116, 188, 218, 255, 288, 357, 392, 420
FatI CATG 2 cut(s) 253, 390
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 93, 228, 275, 351
FokI GGATG 2 cut(s) 134, 142
Fsp4HI GCNGC 4 cut(s) 93, 228, 275, 351
FspBI CTAG 2 cut(s) 50, 68
GluI GCNGC 4 cut(s) 93, 228, 275, 351
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 1 cut(s) 297
Hin1II CATG 2 cut(s) 257, 394
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 2 cut(s) 169, 254
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 19, 166, 301
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 4, 92
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 82, 152
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 257, 394
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 73, 403
LpnPI CCDG 6 cut(s) 81, 111, 138, 149, 154, 263
Lsp1109I GCAGC 4 cut(s) 104, 239, 261, 337
LweI GCATC 2 cut(s) 164, 412
MaeI CTAG 2 cut(s) 50, 68
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 46
MluCI AATT 2 cut(s) 78, 439
MnlI CCTC 3 cut(s) 37, 64, 192
MseI TTAA 5 cut(s) 35, 192, 332, 432, 442
MslI CAYNNNNRTG 2 cut(s) 17, 19
MspR9I CCNGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 59, 82, 152
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 257, 394
NlaIV GGNNCC 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 17
PagI TCATGA 1 cut(s) 253
PctI GAATGC 1 cut(s) 134
PkrI GCNGC 4 cut(s) 94, 229, 276, 352
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 17, 19
SaqAI TTAA 5 cut(s) 35, 192, 332, 432, 442
SatI GCNGC 4 cut(s) 93, 228, 275, 351
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 126
SetI ASST 6 cut(s) 11, 42, 168, 180, 377, 408
SfaNI GCATC 2 cut(s) 164, 412
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 17, 19
Sse9I AATT 2 cut(s) 78, 439
SspMI CTAG 2 cut(s) 50, 68
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 42
TasI AATT 2 cut(s) 78, 439
Tru1I TTAA 5 cut(s) 35, 192, 332, 432, 442
Tru9I TTAA 5 cut(s) 35, 192, 332, 432, 442
TscAI CASTG 1 cut(s) 60
TseI GCWGC 4 cut(s) 92, 227, 274, 350
TspDTI ATGAA 5 cut(s) 91, 96, 249, 320, 358
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 2 cut(s) 50, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.