RchiOBHm_Chr5g0024711

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000192
Physical Location & Seq
Reverse (-)
18782085 .. 18783568
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30444

Sequence Viewer

Length: 483 bp
ATGCGTGCTGAACTGGTAATTGATGAATTAAGAATTGGCTGGACAGAGCAAATGGAGATTGCAGAATCAAAAGCAGAATGGGAGTTACTAAGCTGGGATGACTTGCAGAAGATGAAATATTCATGGAGCGTGGCATGTGAAGCGTTAAGATTGTTGCCACCAATTCTCGGAACTTTTAGAGAGGCCATTACCAACTTTGCGTACGAAGGATACATGATTCCAAAAGGAATGAAGTTCGATAAGTCGAGGTTCCAAGGACAAGGACCAGCTCCTTATTCATACGTTCCTTTTGGAGGAGGACCTCGAATGTGTCCAGAAAAAGAATATGCTCGGTTCAAGATATTGGTTTTCATGCATAATGTTGTCACTAGATTTAAATGGGAGATGGTTTTTCCAGACGAAAAAATGATCATGGACCCCGTTCTTATTGCTACAAAAGGACTTCATATTCGCCTTTTTCCTCATCAATCATCATCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

160

Amino Acids

18.63

Weight (kDa)

6.84

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 77 1.9e-06 Cytochrome P450
p450 PF00067 78 - 146 2.2e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 167, 293
AgsI TTSAA 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 2 cut(s) 93, 269
AluI AGCT 2 cut(s) 93, 269
AoxI GGCC 1 cut(s) 183
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
AspS9I GGNCC 3 cut(s) 263, 299, 415
AvaII GGWCC 3 cut(s) 263, 299, 415
BccI CCATC 1 cut(s) 379
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 408
BfaI CTAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 203
Bme18I GGWCC 3 cut(s) 263, 299, 415
BmgT120I GGNCC 3 cut(s) 263, 299, 415
BmiI GGNNCC 2 cut(s) 251, 417
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 293
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 103, 473
BseLI CCNNNNNNNGG 2 cut(s) 167, 293
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 1 cut(s) 185
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 167, 293
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 408
BspANI GGCC 1 cut(s) 185
BspHI TCATGA 1 cut(s) 479
BspLI GGNNCC 2 cut(s) 251, 417
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 103, 473
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 138
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 103, 473
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 263, 299, 415
Csp6I GTAC 1 cut(s) 202
CviAII CATG 6 cut(s) 123, 135, 214, 352, 412, 480
CviJI RGCY 4 cut(s) 39, 93, 185, 269
CviKI_1 RGCY 4 cut(s) 39, 93, 185, 269
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DraI TTTAAA 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 263, 299, 415
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 6 cut(s) 126, 138, 217, 355, 415, 483
FatI CATG 6 cut(s) 122, 134, 213, 351, 411, 479
FbaI TGATCA 1 cut(s) 408
FokI GGATG 2 cut(s) 110, 460
FspBI CTAG 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 185
Hin1II CATG 6 cut(s) 126, 138, 217, 355, 415, 483
HinfI GANTC 2 cut(s) 65, 217
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 314, 337, 395, 480
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 62, 106, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 6 cut(s) 126, 138, 217, 355, 415, 483
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 126, 274
LpnPI CCDG 5 cut(s) 25, 79, 279, 327, 408
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 84, 364
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 1 cut(s) 121
MluCI AATT 4 cut(s) 18, 26, 33, 162
MnlI CCTC 6 cut(s) 175, 240, 287, 290, 312, 471
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 3 cut(s) 29, 146, 375
MslI CAYNNNNRTG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 408
NlaIII CATG 6 cut(s) 126, 138, 217, 355, 415, 483
NlaIV GGNNCC 2 cut(s) 251, 417
NmuCI GTSAC 1 cut(s) 364
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 138
PagI TCATGA 1 cut(s) 479
PfeI GAWTC 2 cut(s) 65, 217
Pfl23II CGTACG 1 cut(s) 201
PpuMI RGGWCCY 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 93
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 251, 417
PspPI GGNCC 3 cut(s) 263, 299, 415
PspPPI RGGWCCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 478
SaqAI TTAA 3 cut(s) 29, 146, 375
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 3 cut(s) 263, 299, 415
SetI ASST 5 cut(s) 95, 251, 271, 285, 304
SinI GGWCC 3 cut(s) 263, 299, 415
SmiI ATTTAAAT 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 478
Sse9I AATT 4 cut(s) 18, 26, 33, 162
SspI AATATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 253
SwaI ATTTAAAT 1 cut(s) 376
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 237, 245, 304
TasI AATT 4 cut(s) 18, 26, 33, 162
TfiI GAWTC 2 cut(s) 65, 217
Tru1I TTAA 3 cut(s) 29, 146, 375
Tru9I TTAA 3 cut(s) 29, 146, 375
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 7 cut(s) 39, 111, 128, 245, 267, 340, 434
VpaK11BI GGWCC 3 cut(s) 263, 299, 415
XagI CCTNNNNNAGG 1 cut(s) 291
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.