Rroxscaffold_7G00188110

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000192
Physical Location & Seq
Forward (+)
27612279 .. 27615799
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188110.1

Sequence Viewer

Length: 741 bp
ATGAGGTTGGTGTTTGGTAGTGAAAGGCCTCTACGCCTTCGACTATGTCGTGCCCCAGCCCCACAATCACAGCCCCCCTCCCCGGTGCAACCAACCTCCTCAAACCTTAAACCCTCCTTCACCTCTGTACTTTGTCATCAACTTCTAGGGTTCTCCATCGATGACTTTCCTTTGCCGTCATTGGAGGACGGTTTAATCACGGTTCAAATTTCAAAAGACTCCTGTCTTAAGGGCCTTGATAGAGCATTTTCCAGCACCGAAGAGTTTGATCCGAGCAGGTTTGAGAATGGAAAGGCCGTTCCAGCTTACTCAAATATCCCATTCGGAAGCGGTCCTCGAATCTGTCCCAGAAAAGAATATGCTCGACTTCAACTTATGTGTTTCCTCCATCACGTCGTTACAAGATACAAATGGGAAGTGACAAATACAAAGGCCAAAATTGCAGGCGGTTTGAATCCTGTTCCAAAAGAAGGGTTTCACATTCGCATCCAACCTTACAATAAGTTGGCACGAGTAGAAGATGCTTCGATGTTTACTCCCAATTTGGTTGAGCCAATGAAGTTTGCTCCCATTGTCTCAAGAGACATAATGATTGCACTTGGAAAGGTGAAGTCGGGTCTAGTTTTGGTTCCAACTAGTCAAGATACAACCTCTTCCATGGCCTCGATTCCCCTGGTTTCTCAAAGATACACTCACCACAAGCACCTGCAGATAGTTTGGCCTCCACCTCTCGTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

246

Amino Acids

27.43

Weight (kDa)

9.46

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 143 1.6e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 714
Acc36I ACCTGC 2 cut(s) 267, 714
AciI CCGC 2 cut(s) 330, 447
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 82, 470
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 4 cut(s) 206, 213, 371, 454
AhlI ACTAGT 1 cut(s) 635
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 672
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 576, 580
AlwI GGATC 1 cut(s) 263
AoxI GGCC 6 cut(s) 26, 232, 294, 432, 660, 719
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 232, 332
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 3 cut(s) 112, 619, 686
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 55
BauI CACGAG 2 cut(s) 510, 731
BccI CCATC 2 cut(s) 164, 396
BceAI ACGGC 2 cut(s) 160, 281
BciT130I CCWGG 1 cut(s) 674
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 576, 580
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 3 cut(s) 146, 620, 636
BfmI CTRYAG 1 cut(s) 707
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 2 cut(s) 267, 714
Bme1390I CCNGG 2 cut(s) 83, 674
Bme18I GGWCC 1 cut(s) 332
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 232, 332
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 2 cut(s) 83, 674
BmsI GCATC 2 cut(s) 495, 511
BoxI GACNNNNGTC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 81, 657, 672
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 470
BseBI CCWGG 1 cut(s) 674
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 81, 657, 672
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 82, 470
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 6 cut(s) 28, 234, 296, 434, 662, 721
BshVI ATCGAT 1 cut(s) 159
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 82, 470
BsmAI GTCTC 2 cut(s) 576, 580
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 6 cut(s) 28, 234, 296, 434, 662, 721
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 2 cut(s) 330, 447
BspANI GGCC 6 cut(s) 28, 234, 296, 434, 662, 721
BspDI ATCGAT 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 630
BspMAI CTGCAG 1 cut(s) 711
BspMI ACCTGC 2 cut(s) 267, 714
BspPI GGATC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 81, 657, 672
BssMI GATC 1 cut(s) 268
BssSI CACGAG 2 cut(s) 510, 731
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 2 cut(s) 510, 731
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 2 cut(s) 191, 202
Bst6I CTCTTC 2 cut(s) 255, 658
BstAFI CTTAAG 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 445
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 486
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 576, 580
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 302, 440
BstNI CCWGG 1 cut(s) 674
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 2 cut(s) 81, 672
BstSFI CTRYAG 1 cut(s) 707
BstSLI GKGCMC 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 6 cut(s) 28, 234, 296, 434, 662, 721
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 657
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 486
BveI ACCTGC 2 cut(s) 267, 714
Cac8I GCNNGC 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 232, 332
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 658
CviQI GTAC 1 cut(s) 128
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 255, 658
EarI CTCTTC 2 cut(s) 255, 658
Eco130I CCWWGG 1 cut(s) 657
Eco147I AGGCCT 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 672
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 1 cut(s) 661
FaiI YATR 5 cut(s) 46, 360, 377, 587, 659
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 657
FokI GGATG 1 cut(s) 473
FspBI CTAG 3 cut(s) 146, 620, 636
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 6 cut(s) 28, 234, 296, 434, 662, 721
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 661
HinfI GANTC 4 cut(s) 218, 339, 454, 667
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 112, 619, 686
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 2 cut(s) 273, 326
Hpy188III TCNNGA 2 cut(s) 579, 641
Hpy8I GTNNAC 1 cut(s) 534
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 47, 127, 464
HpyCH4III ACNGT 2 cut(s) 191, 202
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 88, 443, 596, 709
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 440
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 661
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 571
LweI GCATC 2 cut(s) 495, 511
MaeI CTAG 3 cut(s) 146, 620, 636
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 397, 418
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 272, 530, 645
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 207, 438, 541
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 514, 656
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 3 cut(s) 108, 194, 228
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 83, 674
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 302, 440
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 657
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 714
PceI AGGCCT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 3 cut(s) 339, 454, 667
PflFI GACNNNGTC 1 cut(s) 45
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 232, 332
PstI CTGCAG 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 45
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SaqAI TTAA 3 cut(s) 108, 194, 228
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 232, 332
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 83, 674
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 2 cut(s) 495, 511
SfcI CTRYAG 1 cut(s) 707
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 227, 577
SmoI CTYRAG 2 cut(s) 227, 577
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 3 cut(s) 207, 438, 541
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 2 cut(s) 330, 447
SspMI CTAG 3 cut(s) 146, 620, 636
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 81, 672
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 191, 202
TaiI ACGT 1 cut(s) 396
TaqI TCGA 6 cut(s) 40, 159, 337, 364, 527, 665
TasI AATT 3 cut(s) 207, 438, 541
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 3 cut(s) 339, 454, 667
Tru1I TTAA 3 cut(s) 108, 194, 228
Tru9I TTAA 3 cut(s) 108, 194, 228
TseFI GTSAC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 572
Tth111I GACNNNGTC 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 3 cut(s) 146, 620, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.