MD13G1219600.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000192
Physical Location & Seq
Reverse (-)
21264510 .. 21264863
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1219600.v1.1.491

Sequence Viewer

Length: 234 bp
ATGAAGGTTAAACGATTCCAAAAGGGTGGAAGCACGAACAAAATCCCCGAATACTTTCCTGATCCGGAAGAGTTTGATCCGACTAGGTTTGAGAACGGAAAAACTCCTCCGGCTTACTCTAACATCCCATTTGGCAGCGGTCCTCGAATTTGTCCGGGAAAAGAATATGCTAGACTCCAACTTTTGTGTTCCCTCCATCACTTTGTCACAAAATACAAGTGGGAACTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

78

Amino Acids

8.92

Weight (kDa)

9.23

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 76 2.6e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 56, 71
AcsI RAATTY 1 cut(s) 147
AhlI ACTAGT 1 cut(s) 226
AlwI GGATC 2 cut(s) 56, 71
Aor13HI TCCGGA 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 204
BcnI CCSGG 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 3 cut(s) 84, 171, 227
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 64
BseGI GGATG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 65, 110, 155
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 61, 76
BspACI CCGC 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 64
BspPI GGATC 2 cut(s) 56, 71
BssMI GATC 2 cut(s) 61, 76
Bst6I CTCTTC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 2 cut(s) 64, 79
BstMBI GATC 2 cut(s) 61, 76
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 140
CviJI RGCY 1 cut(s) 113
CviKI_1 RGCY 1 cut(s) 113
DpnI GATC 2 cut(s) 63, 78
DpnII GATC 2 cut(s) 61, 76
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 140
FaiI YATR 2 cut(s) 168, 232
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 3 cut(s) 84, 171, 227
GluI GCNGC 1 cut(s) 136
HapII CCGG 3 cut(s) 65, 110, 155
HinfI GANTC 2 cut(s) 15, 174
HpaII CCGG 3 cut(s) 65, 110, 155
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 59, 65
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 61, 76
LpnPI CCDG 4 cut(s) 72, 78, 123, 168
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 3 cut(s) 84, 171, 227
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 63, 78
MboI GATC 2 cut(s) 61, 76
MboII GAAGA 1 cut(s) 80
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 104, 202
MnlI CCTC 3 cut(s) 117, 153, 203
MroI TCCGGA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 3 cut(s) 65, 110, 155
MspR9I CCNGG 1 cut(s) 156
NciI CCSGG 1 cut(s) 156
NdeII GATC 2 cut(s) 61, 76
NmuCI GTSAC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 61, 76
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 156
SetI ASST 2 cut(s) 9, 89
SinI GGWCC 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 138
SspMI CTAG 3 cut(s) 84, 171, 227
StyD4I CCNGG 1 cut(s) 154
TaqI TCGA 1 cut(s) 145
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 84, 171, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.