RchiOBHm_Chr4g0433801

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000192
Physical Location & Seq
Reverse (-)
57794605 .. 57795791
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40227

Sequence Viewer

Length: 477 bp
ATGAAACATGAGCTGAAAACTTCAACAGAACAACTGGAGATTTTGAAGTCCAAAAAATCTGGCGAGGCACTCAATTGGGATGATATGCAAAAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGATGAGGCTCATACCACCTCTTCAGGGAACATTTAGAGAGGCTGCAACAGACTTCACTTACCAAGGTTTTACAATTCCTAAAGGATGGAAGCGCCAGAAGAGTTTGATCCTACAAGGTTCGATCGGGAAAGCAACTCCTCCGCCTTACACAAACATCCCATTTGGGAGCGGTCCTCGAATCTGCCCCGGAAAGGACTACGCTCGTCTGCAAATTCTTAGTTTTATGCACCATCTTGTTATAAGATTCAAATGGGAACTTGTGAATCCTAATTGCAAGATCTCAGGTGGTATGAATCCCTTTCCAGTTGATGGGCTGAAGGTTCGCCTCCAAGCTCAACCCATTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

158

Amino Acids

17.93

Weight (kDa)

9.79

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 70 3.2e-08 Cytochrome P450
p450 PF00067 89 - 130 3.3e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 294
AciI CCGC 2 cut(s) 266, 294
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 131, 461
AfiI CCNNNNNNNGG 3 cut(s) 149, 316, 434
AgsI TTSAA 4 cut(s) 24, 46, 373, 470
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 13, 458, 473
AluI AGCT 3 cut(s) 13, 458, 473
AlwI GGATC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 204, 363, 428
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 402
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 119, 312
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 119, 312
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 2 cut(s) 56, 140
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 117, 187, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 316, 434
Bse1I ACTGG 2 cut(s) 39, 428
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 117, 187, 310
BseGI GGATG 3 cut(s) 85, 215, 279
BseLI CCNNNNNNNGG 3 cut(s) 149, 316, 434
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 39, 428
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 149, 316, 434
Bsp143I GATC 3 cut(s) 231, 246, 402
BspACI CCGC 2 cut(s) 266, 294
BspCNI CTCAG 1 cut(s) 419
BspPI GGATC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 39, 428
BssECI CCNNGG 3 cut(s) 117, 187, 310
BssMI GATC 3 cut(s) 231, 246, 402
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 150, 218
BstDEI CTNAG 2 cut(s) 341, 406
BstF5I GGATG 3 cut(s) 85, 215, 279
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 234, 249, 405
BstMBI GATC 3 cut(s) 231, 246, 402
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 117, 310
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 3 cut(s) 85, 215, 279
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 296
CviAII CATG 1 cut(s) 8
CviJI RGCY 7 cut(s) 13, 116, 133, 167, 439, 458, 473
CviKI_1 RGCY 7 cut(s) 13, 116, 133, 167, 439, 458, 473
DdeI CTNAG 2 cut(s) 341, 406
DpnI GATC 3 cut(s) 233, 248, 404
DpnII GATC 3 cut(s) 231, 246, 402
Eam1104I CTCTTC 2 cut(s) 150, 218
EarI CTCTTC 2 cut(s) 150, 218
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 131, 461
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 11
FaiI YATR 6 cut(s) 9, 86, 137, 350, 365, 416
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 3 cut(s) 92, 222, 266
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 56, 140
HaeII RGCGCY 1 cut(s) 220
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 4 cut(s) 303, 369, 388, 418
HpaII CCGG 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 88, 170, 334, 352, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 341, 406
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 231, 246, 402
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 9 cut(s) 20, 45, 104, 131, 134, 233, 325, 393, 441
Lsp1109I GCAGC 1 cut(s) 154
MaeII ACGT 1 cut(s) 111
MalI GATC 3 cut(s) 233, 248, 404
MbiI CCGCTC 1 cut(s) 294
MboI GATC 3 cut(s) 231, 246, 402
MboII GAAGA 2 cut(s) 137, 235
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 402
MluCI AATT 4 cut(s) 73, 198, 336, 394
MnlI CCTC 8 cut(s) 58, 115, 123, 153, 157, 273, 309, 461
MseI TTAA 1 cut(s) 475
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 119, 312
MunI CAATTG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 312
NdeII GATC 3 cut(s) 231, 246, 402
NlaIII CATG 1 cut(s) 11
PfeI GAWTC 4 cut(s) 303, 369, 388, 418
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 169
Ple19I CGATCG 1 cut(s) 249
PsiI TTATAA 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 402
PvuI CGATCG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 475
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 231, 246, 402
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 119, 312
SetI ASST 9 cut(s) 15, 114, 145, 193, 244, 412, 447, 460, 475
SinI GGWCC 1 cut(s) 296
Sse9I AATT 4 cut(s) 73, 198, 336, 394
SsiI CCGC 2 cut(s) 266, 294
StyD4I CCNGG 2 cut(s) 117, 310
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 245, 301
TasI AATT 4 cut(s) 73, 198, 336, 394
TfiI GAWTC 4 cut(s) 303, 369, 388, 418
Tru1I TTAA 1 cut(s) 475
Tru9I TTAA 1 cut(s) 475
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 17, 110, 431
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.