Rmu_sc0007192.1_g000013

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007192.1
OG0000192
Physical Location & Seq
Reverse (-)
58208 .. 59372
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007192.1_g000013.1.cds

Sequence Viewer

Length: 978 bp
atggactcaatcacacaagaacaaatgaagatctactgggaaggcaagaaccaggtcttggcttaccctctggccaagactctgactctaagtcttgcctgtagattcttcttggggattgatgagccggagaggattgctaggcttgtggagaactttgatgatgtgactgtggggatgcactcacttattgtgaacttcccgggaaccattttctacagagcaacaaaagcagctgatgcgatcaggaaggagttgaagactgtgatccaggagaagaaggctgcaatggcatcaggagcacccatgatggatattctgacacatatgattgtggccagtgacccatctgggcaacacatgcctgaggctgagattgcagataagatgatgggcttgttgactgctgggtatagtactgtggctactgctatgactttcttcatgaagtatgtgggagaaaggcctgacatctatgccaaggtcctagcagaacaaatggaggtggcagagtcaaagaagccaggacaacttttggaatgggatgacttgaacaagatgaagtactcctggaatgtcatatatgaggtgatgaggttcaccccgccacttcagggaacattccgagaggccttgaccgattttgaatatgccggttacaccattcctaagggctggaaggtatattggactgttagcacaacaaacatgaacccggactacttccccaacccggaaaagttcgacccctcgagatacgatgatgtaagcgcattcccaccatacacatttgtcccatttggaggaggaccaagaatgtgccctggaaaagagtacgctaggcttgcaatactcacttttgttcacaatgtggtcaagaggttcaagtgggaagtggtatttcccaaagaaaagatcacgggtgatatgatgccaacaccagaaaaaggacttcccattcgccttacacgtcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

325

Amino Acids

37.06

Weight (kDa)

6.55

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36110 AT5G36110 AT5G36130 AT5G36140
fragaria_vesca FvH4_2g39160 FvH4_3g15030 FvH4_3g38021 FvH4_3g38080 FvH4_4g00250 FvH4_4g01400 FvH4_5g18260 FvH4_5g18260 FvH4_5g29490 FvH4_7g03260 FvH4_7g12550 FvH4_7g12560 FvH4_7g14310 FvH4_7g14330
malus_domestica MD04G1002500.v1.1 MD11G1006100.v1.1 MD11G1157200.v1.1 MD11G1157300.v1.1 MD13G1116400.v1.1 MD13G1219600.v1.1 MD13G1284800.v1.1 MD16G1278300.v1.1 MD17G1219500.v1.1
prunus_persica Prupe.1G002500_v2.0.a1 Prupe.6G120400_v2.0.a1
pyrus_communis pycom04g00270 pycom10g20130 pycom11g12750 pycom16g24900 pycom17g22420 pycom420g00590
rosa_chinensis RchiOBHm_Chr1g0325391 RchiOBHm_Chr1g0340921 RchiOBHm_Chr1g0355301 RchiOBHm_Chr1g0355311 RchiOBHm_Chr1g0355331 RchiOBHm_Chr1g0355341 RchiOBHm_Chr2g0153901 RchiOBHm_Chr4g0384961 RchiOBHm_Chr4g0384991 RchiOBHm_Chr4g0393781 RchiOBHm_Chr4g0433801 RchiOBHm_Chr5g0024681 RchiOBHm_Chr5g0024711 RchiOBHm_Chr5g0024721 RchiOBHm_Chr5g0024791 RchiOBHm_Chr7g0177321 RchiOBHm_Chr7g0177351 RchiOBHm_Chr7g0177361
rosa_laevigata RLG00000001838 RLG00000005543 RLG00000010261 RLG00000028154 RLG00000028157 RLG00000028158 RLG00000028162 RLG00000030142 RLG00000032812 RLG00000032813 RLG00000032814
rosa_multiflora Rmu_co8235405.1_g000001 Rmu_co8395679.1_g000001 Rmu_co8439995.1_g000001 Rmu_sc0000999.1_g000011 Rmu_sc0001171.1_g000026 Rmu_sc0002766.1_g000009 Rmu_sc0003822.1_g000014 Rmu_sc0004135.1_g000001 Rmu_sc0004135.1_g000004 Rmu_sc0004135.1_g000006 Rmu_sc0004135.1_g000012 Rmu_sc0004135.1_g000017 Rmu_sc0004135.1_g000020 Rmu_sc0004637.1_g000001 Rmu_sc0005310.1_g000005 Rmu_sc0006151.1_g000002 Rmu_sc0007192.1_g000013 Rmu_sc0008633.1_g000002 Rmu_sc0020285.1_g000001
rosa_roxburghii Rroxscaffold_1G00054590 Rroxscaffold_2G00098180 Rroxscaffold_3G00234050 Rroxscaffold_3G00236820 Rroxscaffold_3G00275940 Rroxscaffold_4G00300500 Rroxscaffold_4G00300510 Rroxscaffold_5G00332950 Rroxscaffold_7G00188110
rosa_rugosa Rorug01G0051800 Rorug01G0051900 Rorug01G0052200 Rorug01G0052300 Rorug01G0052300 Rorug01G0246500 Rorug01G0246500 Rorug01G0246600 Rorug02G0411000 Rorug03G0298400 Rorug03G0298400 Rorug06G0404900 Rorug06G0405200 Rorug07G0209500 Rorug07G0227800
rosa_samantha Rh1AG066900 Rh1AG258800 Rh1AG259000 Rh1BG055200 Rh1BG055300 Rh1BG228400 Rh1BG228500 Rh1BG228600 Rh1BG228700 Rh1CG068300 Rh1CG242400 Rh1CG242600 Rh1CG242800 Rh1CG242900 Rh1CG243000 Rh1DG073000 Rh1DG256200 Rh1DG256300 Rh1DG256400 Rh1DG256500 Rh4AG002300 Rh4AG326300 Rh4BG001800 Rh4CG002200 Rh4DG001800 Rh5BG173900 Rh5CG190900 Rh5DG175500 Rh7AG004800 Rh7AG004900 Rh7AG349600 Rh7AG375800 Rh7BG004900 Rh7BG362800 Rh7CG004700 Rh7CG366800 Rh7CG394300 Rh7DG004600 Rh7DG004700 Rh7DG374000
rosa_wichuraiana Rw0G008010 Rw0G008840 Rw1G022840 Rw1G022850 Rw4G000710 Rw4G028240 Rw4G028290 Rw5G015960 Rw7G000400 Rw7G029670 Rw7G031540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 1 cut(s) 605
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 72, 336
AcuI CTGAAG 1 cut(s) 596
AdeI CACNNNGTG 1 cut(s) 871
AfaI GTAC 3 cut(s) 418, 566, 836
AfiI CCNNNNNNNGG 5 cut(s) 58, 614, 733, 803, 947
AflIII ACRYGT 1 cut(s) 968
AgsI TTSAA 4 cut(s) 259, 553, 647, 886
AhdI GACNNNNNGTC 1 cut(s) 90
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 5 cut(s) 51, 270, 523, 569, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 2 cut(s) 202, 751
AoxI GGCC 4 cut(s) 72, 336, 464, 630
ApeKI GCWGC 2 cut(s) 233, 284
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 2 cut(s) 484, 809
AsuC2I CCSGG 4 cut(s) 203, 204, 716, 734
AsuHPI GGTGA 3 cut(s) 592, 601, 935
AvaI CYCGRG 2 cut(s) 202, 751
AvaII GGWCC 2 cut(s) 484, 809
AxyI CCTNAGG 2 cut(s) 366, 669
BaeGI GKGCMC 1 cut(s) 824
BalI TGGCCA 2 cut(s) 74, 338
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 245, 271
BccI CCATC 3 cut(s) 304, 355, 385
BciT130I CCWGG 5 cut(s) 53, 272, 525, 571, 825
BcnI CCSGG 4 cut(s) 203, 204, 716, 734
BfaI CTAG 4 cut(s) 141, 488, 840, 976
BfmI CTRYAG 2 cut(s) 100, 217
BglII AGATCT 1 cut(s) 30
BisI GCNGC 2 cut(s) 234, 285
BlsI GCNGC 2 cut(s) 235, 286
BmcAI AGTACT 2 cut(s) 418, 566
Bme1390I CCNGG 9 cut(s) 53, 203, 204, 272, 525, 571, 716, 734, 825
Bme18I GGWCC 2 cut(s) 484, 809
BmeRI GACNNNNNGTC 1 cut(s) 90
BmeT110I CYCGRG 2 cut(s) 202, 751
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 2 cut(s) 484, 809
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 9 cut(s) 53, 203, 204, 272, 525, 571, 716, 734, 825
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 4 cut(s) 168, 229, 302, 921
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 266
BpuMI CCSGG 4 cut(s) 203, 204, 716, 734
BsaJI CCNNGG 3 cut(s) 202, 480, 823
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 614, 733, 803, 947
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 41, 339
Bse21I CCTNAGG 2 cut(s) 366, 669
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 5 cut(s) 53, 272, 525, 571, 825
BseDI CCNNGG 3 cut(s) 202, 480, 823
BseGI GGATG 2 cut(s) 183, 550
BseLI CCNNNNNNNGG 5 cut(s) 58, 614, 733, 803, 947
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 357, 363
BseNI ACTGG 2 cut(s) 41, 339
BseRI GAGGAG 1 cut(s) 819
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 2 cut(s) 245, 271
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 4 cut(s) 74, 338, 466, 632
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 2 cut(s) 202, 751
BsiSI CCGG 5 cut(s) 128, 203, 654, 716, 734
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 5 cut(s) 58, 614, 733, 803, 947
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 4 cut(s) 74, 338, 466, 632
BsoBI CYCGRG 2 cut(s) 202, 751
Bsp1286I GDGCHC 2 cut(s) 304, 824
Bsp143I GATC 4 cut(s) 30, 243, 267, 915
BspACI CCGC 1 cut(s) 605
BspANI GGCC 4 cut(s) 74, 338, 466, 632
BspCNI CTCAG 2 cut(s) 358, 364
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 41, 339
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 3 cut(s) 202, 480, 823
BssMI GATC 4 cut(s) 30, 243, 267, 915
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 5 cut(s) 53, 272, 525, 571, 825
Bst4CI ACNGT 4 cut(s) 172, 265, 421, 694
BstAPI GCANNNNNTGC 2 cut(s) 239, 361
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 89, 366, 372, 669
BstF5I GGATG 2 cut(s) 183, 550
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 4 cut(s) 33, 246, 270, 918
BstMBI GATC 4 cut(s) 30, 243, 267, 915
BstMWI GCNNNNNNNGC 7 cut(s) 230, 239, 290, 299, 361, 377, 845
BstNI CCWGG 5 cut(s) 53, 272, 525, 571, 825
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 9 cut(s) 51, 201, 202, 270, 523, 569, 714, 732, 823
BstSFI CTRYAG 2 cut(s) 100, 217
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 2 cut(s) 245, 271
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu36I CCTNAGG 2 cut(s) 366, 669
BsuRI GGCC 4 cut(s) 74, 338, 466, 632
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 2 cut(s) 183, 550
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 846
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 773
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 2 cut(s) 484, 809
Cfr9I CCCGGG 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 3 cut(s) 417, 565, 835
CviAII CATG 4 cut(s) 307, 361, 445, 709
CviQI GTAC 3 cut(s) 417, 565, 835
DdeI CTNAG 4 cut(s) 89, 366, 372, 669
DpnI GATC 4 cut(s) 32, 245, 269, 917
DpnII GATC 4 cut(s) 30, 243, 267, 915
DraIII CACNNNGTG 1 cut(s) 871
DriI GACNNNNNGTC 1 cut(s) 90
EaeI YGGCCR 2 cut(s) 72, 336
Eam1105I GACNNNNNGTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 2 cut(s) 466, 632
Eco47I GGWCC 2 cut(s) 484, 809
Eco57I CTGAAG 1 cut(s) 596
Eco81I CCTNAGG 2 cut(s) 366, 669
Eco88I CYCGRG 2 cut(s) 202, 751
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 5 cut(s) 51, 270, 523, 569, 823
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 4 cut(s) 310, 364, 448, 712
FaqI GGGAC 1 cut(s) 779
FatI CATG 4 cut(s) 306, 360, 444, 708
FauI CCCGC 1 cut(s) 612
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 234, 285
FokI GGATG 2 cut(s) 190, 557
Fsp4HI GCNGC 2 cut(s) 234, 285
FspBI CTAG 4 cut(s) 141, 488, 840, 976
GlaI GCGC 1 cut(s) 772
GluI GCNGC 2 cut(s) 234, 285
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 4 cut(s) 74, 338, 466, 632
HapII CCGG 5 cut(s) 128, 203, 654, 716, 734
HhaI GCGC 1 cut(s) 773
Hin1II CATG 4 cut(s) 310, 364, 448, 712
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 5 cut(s) 5, 79, 85, 105, 512
HpaII CCGG 5 cut(s) 128, 203, 654, 716, 734
HphI GGTGA 3 cut(s) 592, 601, 935
Hpy166II GTNNAC 4 cut(s) 196, 402, 600, 865
Hpy188I TCNGA 3 cut(s) 84, 321, 626
Hpy188III TCNNGA 5 cut(s) 247, 297, 445, 753, 877
Hpy8I GTNNAC 4 cut(s) 196, 402, 600, 865
HpyAV CCTTC 4 cut(s) 35, 244, 274, 673
HpyCH4III ACNGT 4 cut(s) 172, 265, 421, 694
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 4 cut(s) 181, 287, 380, 848
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 239, 290, 299, 361, 377, 845
HpyF3I CTNAG 4 cut(s) 89, 366, 372, 669
HpySE526I ACGT 1 cut(s) 970
Hsp92II CATG 4 cut(s) 310, 364, 448, 712
HspAI GCGC 1 cut(s) 771
Kzo9I GATC 4 cut(s) 30, 243, 267, 915
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 2 cut(s) 245, 271
LweI GCATC 4 cut(s) 168, 229, 302, 921
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 4 cut(s) 141, 488, 840, 976
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 4 cut(s) 166, 341, 656, 971
MalI GATC 4 cut(s) 32, 245, 269, 917
MboI GATC 4 cut(s) 30, 243, 267, 915
MboII GAAGA 5 cut(s) 40, 100, 271, 289, 433
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 304, 824
MlsI TGGCCA 2 cut(s) 74, 338
MluNI TGGCCA 2 cut(s) 74, 338
MlyI GAGTC 3 cut(s) 73, 79, 521
Mox20I TGGCCA 2 cut(s) 74, 338
MscI TGGCCA 2 cut(s) 74, 338
Msp20I TGGCCA 2 cut(s) 74, 338
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 5 cut(s) 128, 203, 654, 716, 734
MspR9I CCNGG 9 cut(s) 53, 203, 204, 272, 525, 571, 716, 734, 825
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 5 cut(s) 53, 272, 525, 571, 825
MwoI GCNNNNNNNGC 7 cut(s) 230, 239, 290, 299, 361, 377, 845
NciI CCSGG 4 cut(s) 203, 204, 716, 734
NdeI CATATG 1 cut(s) 327
NdeII GATC 4 cut(s) 30, 243, 267, 915
NlaIII CATG 4 cut(s) 310, 364, 448, 712
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 3 cut(s) 166, 341, 971
NspI RCATGY 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 751
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 2 cut(s) 466, 632
PcsI WCGNNNNNNNCGW 1 cut(s) 967
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 58
PfoI TCCNGGA 2 cut(s) 270, 569
PkrI GCNGC 2 cut(s) 235, 286
PleI GAGTC 3 cut(s) 73, 79, 520
PpsI GAGTC 3 cut(s) 73, 79, 520
PpuMI RGGWCCY 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 5 cut(s) 51, 270, 523, 569, 823
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 5 cut(s) 51, 270, 523, 569, 823
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 2 cut(s) 484, 809
PspPPI RGGWCCY 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 704, 736
PsuI RGATCY 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 3 cut(s) 418, 566, 836
RsaNI GTAC 3 cut(s) 417, 565, 835
SatI GCNGC 2 cut(s) 234, 285
Sau3AI GATC 4 cut(s) 30, 243, 267, 915
Sau96I GGNCC 2 cut(s) 484, 809
ScaI AGTACT 2 cut(s) 418, 566
SchI GAGTC 3 cut(s) 73, 79, 521
ScrFI CCNGG 9 cut(s) 53, 203, 204, 272, 525, 571, 716, 734, 825
SduI GDGCHC 2 cut(s) 304, 824
SetI ASST 9 cut(s) 57, 238, 486, 507, 591, 599, 684, 884, 973
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 4 cut(s) 168, 229, 302, 921
SfcI CTRYAG 2 cut(s) 100, 217
Sfr274I CTCGAG 1 cut(s) 751
SinI GGWCC 2 cut(s) 484, 809
SlaI CTCGAG 1 cut(s) 751
SmaI CCCGGG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
SseBI AGGCCT 2 cut(s) 466, 632
SsiI CCGC 1 cut(s) 605
SspMI CTAG 4 cut(s) 141, 488, 840, 976
StuI AGGCCT 2 cut(s) 466, 632
StyD4I CCNGG 9 cut(s) 51, 201, 202, 270, 523, 569, 714, 732, 823
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 172, 265, 421, 694
TaiI ACGT 1 cut(s) 973
TaqI TCGA 2 cut(s) 744, 752
TaqII GACCGA 1 cut(s) 653
TatI WGTACW 2 cut(s) 416, 564
TfiI GAWTC 1 cut(s) 105
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 3 cut(s) 166, 341, 971
TseI GCWGC 2 cut(s) 233, 284
Tsp45I GTSAC 3 cut(s) 166, 341, 971
TspDTI ATGAA 5 cut(s) 41, 433, 461, 575, 725
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 484, 809
XceI RCATGY 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 751
XmaI CCCGGG 1 cut(s) 202
XspI CTAG 4 cut(s) 141, 488, 840, 976
ZrmI AGTACT 2 cut(s) 418, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.