RLG00000022555

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
3651496 .. 3651836
341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022555

Sequence Viewer

Length: 330 bp
ATGGCTCCTTCAAAGACAAGGGCTGCCAATAGAGCAAGGCAGGATGTTATCAATGCATTGAAAGTGACAAGAGCAAGGTCTGCACCGGAACTACCATCTTCTAGTCAATCAAATGCATTTGAAAATAAGCCATCACCAAAGAGAGCAATGACGTCCGTGAGGGTCAGCAAGTCATTGATGAAGAATAAGAAGAAAAAATCATCTAAGGCATCCAACCCAGAAAAAAGTGGTTTAAAGTTGCTGAAGCGTGGTTGTGTTACAATGCACAGGATTGTGAGAAGGAAAATTTTTGGGGTAAAGTTGAAAGTCTTGTTTAATCAGAAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

11.95

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 152
AgsI TTSAA 4 cut(s) 12, 61, 122, 304
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 126
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 103, 139
BfaI CTAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 153
BseGI GGATG 2 cut(s) 49, 209
BseMI GCAATG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 49, 209
BstMWI GCNNNNNNNGC 2 cut(s) 32, 80
BstV1I GCAGC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 49, 209
CviJI RGCY 3 cut(s) 5, 23, 130
CviKI_1 RGCY 3 cut(s) 5, 23, 130
DdeI CTNAG 1 cut(s) 204
DraI TTTAAA 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 263
EcoT22I ATGCAT 2 cut(s) 58, 118
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 56, 196
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 102
GluI GCNGC 1 cut(s) 24
HapII CCGG 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 152
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 321
HpyAV CCTTC 3 cut(s) 18, 273, 316
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 56, 83, 116, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 80
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 26, 99, 231, 253
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 64, 256
MboII GAAGA 3 cut(s) 90, 193, 202
MluCI AATT 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 1 cut(s) 153
Mph1103I ATGCAT 2 cut(s) 58, 118
MseI TTAA 2 cut(s) 233, 315
MspI CCGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 32, 80
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 2 cut(s) 58, 118
PkrI GCNGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 233, 315
SatI GCNGC 1 cut(s) 24
SetI ASST 2 cut(s) 80, 155
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 1 cut(s) 285
SspMI CTAG 1 cut(s) 102
TaiI ACGT 1 cut(s) 155
TasI AATT 1 cut(s) 285
Tru1I TTAA 2 cut(s) 233, 315
Tru9I TTAA 2 cut(s) 233, 315
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 145
XapI RAATTY 1 cut(s) 285
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 153
Zsp2I ATGCAT 2 cut(s) 58, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.