Rh6DG206300

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000695
Physical Location & Seq
Reverse (-)
36739211 .. 36748145
8935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG206300.1

Sequence Viewer

Length: 774 bp
ATGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCCAATGTTCTCACACCTGTATTGGTGGATGGGAAGGTGATCAACAAAGCCGGTACTCCAGTATCTAATAAAGCTGTTGTAAAGAATATGGCTGAAGTCCCCAAATATATCCTAGAGTGCGTAGAGCTCGAAACCAGTCATTTAAAGGGTGAAGAACATGAACTTGTAATATCCAATGCTAGAAAGGGTGCCGATCCTCTTCTTGAACTGGTTCTCGCTCAGTCTCTTACTACCAGAGAGACTTCTCTCTGGACCAAAAGGGCCTTAAAAAGCCGGTTGACGATGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAATTTGCTGTGTTCTTTGATAGAGAAACTGAGAAAATTGCAGAACATGATAGTGGCTGGGAAGATGAGCAAATAGAAGAACAAAATGGCAGGGGGTTGCCGGTGGAAGTGGAAGCTGGTATAGAAGTAGCAGCTACTATAGAAGTGGCAGCTGCTATAGAGCATGTTCATGCCACTCCTACAGAGAAACAACCAAATAAGGCCGCAGGTAAGGGTTCAAAGAAAAGGAAAAGGCAAATAGCTAGTGATGAAGAGGAGTGTATTGACTTGAAGAAGCTGCCAAAAGATTACCCTTCACCTTTGAAGTGCTTGTGGTTGTGGGGGAGAAACGCACTAGCCAATGGGAAGACAATCTCTTTCATGCTAATAGATGAAGTATTTGGGATCAATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

257

Amino Acids

28.82

Weight (kDa)

6.98

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 582
AclWI GGATC 2 cut(s) 227, 770
AcsI RAATTY 2 cut(s) 336, 380
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 245, 597, 649, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 7 cut(s) 113, 166, 494, 512, 530, 620, 655
AluI AGCT 7 cut(s) 113, 166, 494, 512, 530, 620, 655
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 267, 272
AlwI GGATC 2 cut(s) 227, 770
AoxI GGCC 2 cut(s) 300, 579
ApeKI GCWGC 5 cut(s) 325, 509, 527, 530, 655
ApoI RAATTY 2 cut(s) 336, 380
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 291, 300
AsuHPI GGTGA 4 cut(s) 88, 200, 373, 666
AvaII GGWCC 1 cut(s) 291
BaeI ACNNNNGTAYC 4 cut(s) 84, 84, 117, 117
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 312, 517, 521, 539, 642
BccI CCATC 1 cut(s) 62
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 267, 272
BfaI CTAG 4 cut(s) 152, 219, 621, 713
BfmI CTRYAG 3 cut(s) 516, 534, 558
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 6 cut(s) 326, 510, 528, 531, 582, 656
BlsI GCNGC 6 cut(s) 327, 511, 529, 532, 583, 657
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 291, 300
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 3 cut(s) 89, 312, 478
Bse1I ACTGG 3 cut(s) 98, 174, 252
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 272, 399
BseNI ACTGG 3 cut(s) 98, 174, 252
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 5 cut(s) 312, 517, 521, 539, 642
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 2 cut(s) 302, 581
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 90, 313, 479
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 267, 272
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 302, 581
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 78, 232, 762
BspACI CCGC 1 cut(s) 582
BspANI GGCC 2 cut(s) 302, 581
BspCNI CTCAG 2 cut(s) 271, 400
BspLI GGNNCC 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 2 cut(s) 227, 770
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 3 cut(s) 89, 312, 478
BsrI ACTGG 3 cut(s) 98, 174, 252
BssAI RCCGGY 3 cut(s) 89, 312, 478
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 3 cut(s) 78, 232, 762
Bst6I CTCTTC 2 cut(s) 243, 624
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 258, 408
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 3 cut(s) 81, 235, 765
BstMAI GTCTC 2 cut(s) 267, 272
BstMBI GATC 3 cut(s) 78, 232, 762
BstNSI RCATGY 1 cut(s) 545
BstSFI CTRYAG 3 cut(s) 516, 534, 558
BstV1I GCAGC 5 cut(s) 312, 517, 521, 539, 642
BstV2I GAAGAC 1 cut(s) 731
BsuRI GGCC 2 cut(s) 302, 581
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 1 cut(s) 8
Cfr10I RCCGGY 3 cut(s) 89, 312, 478
Cfr13I GGNCC 2 cut(s) 291, 300
Csp6I GTAC 1 cut(s) 93
CviAII CATG 5 cut(s) 197, 425, 542, 548, 739
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 258, 408
DpnI GATC 3 cut(s) 80, 234, 764
DpnII GATC 3 cut(s) 78, 232, 762
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 243, 624
EarI CTCTTC 2 cut(s) 243, 624
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 5 cut(s) 200, 428, 545, 551, 742
FaqI GGGAC 1 cut(s) 122
FatI CATG 5 cut(s) 196, 424, 541, 547, 738
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 6 cut(s) 326, 510, 528, 531, 582, 656
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 326, 510, 528, 531, 582, 656
FspBI CTAG 4 cut(s) 152, 219, 621, 713
GluI GCNGC 6 cut(s) 326, 510, 528, 531, 582, 656
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 302, 581
HapII CCGG 3 cut(s) 90, 313, 479
Hin1II CATG 5 cut(s) 200, 428, 545, 551, 742
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HpaII CCGG 3 cut(s) 90, 313, 479
HphI GGTGA 4 cut(s) 88, 200, 373, 666
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 242, 289
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 3 cut(s) 67, 358, 681
HpyCH4V TGCA 2 cut(s) 328, 419
HpyF3I CTNAG 2 cut(s) 258, 408
Hsp92II CATG 5 cut(s) 200, 428, 545, 551, 742
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 232, 762
Lsp1109I GCAGC 5 cut(s) 312, 517, 521, 539, 642
LweI GCATC 1 cut(s) 312
MaeI CTAG 4 cut(s) 152, 219, 621, 713
MalI GATC 3 cut(s) 80, 234, 764
MboI GATC 3 cut(s) 78, 232, 762
MboII GAAGA 7 cut(s) 203, 230, 452, 467, 641, 661, 736
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 3 cut(s) 336, 380, 414
MnlI CCTC 5 cut(s) 12, 24, 246, 361, 625
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 2 cut(s) 182, 305
MslI CAYNNNNRTG 2 cut(s) 429, 546
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 3 cut(s) 90, 313, 479
NdeII GATC 3 cut(s) 78, 232, 762
NlaIII CATG 5 cut(s) 200, 428, 545, 551, 742
NlaIV GGNNCC 1 cut(s) 229
NspI RCATGY 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 6 cut(s) 327, 511, 529, 532, 583, 657
Psp124BI GAGCTC 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 291, 300
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 429, 546
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 182, 305
SatI GCNGC 6 cut(s) 326, 510, 528, 531, 582, 656
Sau3AI GATC 3 cut(s) 78, 232, 762
Sau96I GGNCC 2 cut(s) 291, 300
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 3 cut(s) 516, 534, 558
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 429, 546
Sse9I AATT 3 cut(s) 336, 380, 414
SsiI CCGC 1 cut(s) 582
SspMI CTAG 4 cut(s) 152, 219, 621, 713
SstI GAGCTC 1 cut(s) 168
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 336, 380, 414
TauI GCSGC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 182, 305
Tru9I TTAA 2 cut(s) 182, 305
TseI GCWGC 5 cut(s) 325, 509, 527, 530, 655
TspDTI ATGAA 5 cut(s) 213, 536, 642, 727, 765
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 2 cut(s) 336, 380
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 4 cut(s) 152, 219, 621, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.