Rroxscaffold_1G00026380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000695
Physical Location & Seq
Forward (+)
33205413 .. 33214519
9107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026380.1

Sequence Viewer

Length: 561 bp
ATGGCCCATAAGCGAAGCAGGTCAAGGAGTTTCCGAAGCAACGGAGCGGTGACGGCGATGAGAGAGGTCCAAAGGAATGTTGAAAAATACAAGGCTGCTAATCAACGAGACAATATTTACATTGGAAGAGGAATCTCGGCGGATGAACTAAGGAGGCTGGTGGAAGTAGATAAGCTTATTGCTATTATGGCTCCTTCAAAGACAATGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACACGAGCAAGATCTGCACCAGAACTAGCAACTTCGGTCATCAAATGCATCGGAAATAAGCCATCACCAAAGAGAGCAATGACGTTGCTAAGGGTCAAGAAGTCCTTGACGAAGAATAACAAGAAAAAATCATCTAAGGCATCTAGCCCGAGAAAAAGCGGCTTAAAGTTGTTGAAGCGTGGTTGTGTTACAATGCACGGGATTGTGAGAAGGAAAATTCTTGGAATAAAGTTGAAAGTCTTGTTTAATCGAAGGGGTCGCCTTATGGTGCTGCAGCCAAGGAAATGCAGTCATATATTGGGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.93

Weight (kDa)

11.81

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 9
AccBSI CCGCTC 1 cut(s) 47
AciI CCGC 3 cut(s) 47, 140, 411
AcsI RAATTY 1 cut(s) 468
AfaI GTAC 1 cut(s) 557
AgsI TTSAA 5 cut(s) 83, 198, 247, 427, 487
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 95, 209, 523, 526
ApoI RAATTY 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 4, 67
AsuHPI GGTGA 2 cut(s) 61, 309
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 67
BauI CACGAG 1 cut(s) 255
BbvI GCAGC 4 cut(s) 82, 196, 510, 538
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 4 cut(s) 216, 278, 396, 559
BfmI CTRYAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 9
BglII AGATCT 1 cut(s) 263
BisI GCNGC 5 cut(s) 96, 210, 412, 524, 527
BlsI GCNGC 5 cut(s) 97, 211, 413, 525, 528
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 4, 67
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 2 cut(s) 309, 401
Bpu10I CCTNAGC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 82, 196, 510, 538
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 400
Bsp143I GATC 1 cut(s) 263
BspACI CCGC 3 cut(s) 47, 140, 411
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 528
BspMI ACCTGC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 1 cut(s) 263
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 530
Bst2BI CACGAG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 149, 341, 387
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 4 cut(s) 53, 188, 218, 266
BstSFI CTRYAG 1 cut(s) 524
BstV1I GCAGC 4 cut(s) 82, 196, 510, 538
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 4, 67
Csp6I GTAC 1 cut(s) 556
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 149, 341, 387
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EciI GGCGGA 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 530
EcoT22I ATGCAT 2 cut(s) 244, 302
ErhI CCWWGG 1 cut(s) 530
FaiI YATR 5 cut(s) 9, 188, 518, 546, 548
FalI AAGNNNNNCTT 2 cut(s) 341, 373
Fnu4HI GCNGC 5 cut(s) 96, 210, 412, 524, 527
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 96, 210, 412, 524, 527
FspBI CTAG 4 cut(s) 216, 278, 396, 559
GluI GCNGC 5 cut(s) 96, 210, 412, 524, 527
HaeIII GGCC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 132
HphI GGTGA 2 cut(s) 61, 309
Hpy188I TCNGA 2 cut(s) 35, 305
Hpy188III TCNNGA 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 204, 456, 498
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 6 cut(s) 242, 269, 300, 448, 526, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 188, 218, 266
HpyF3I CTNAG 3 cut(s) 149, 341, 387
HpySE526I ACGT 1 cut(s) 335
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 44, 196
LpnPI CCDG 3 cut(s) 4, 143, 285
Lsp1109I GCAGC 4 cut(s) 82, 196, 510, 538
LweI GCATC 2 cut(s) 309, 401
MaeI CTAG 4 cut(s) 216, 278, 396, 559
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 49, 250, 439
MalI GATC 1 cut(s) 265
MbiI CCGCTC 1 cut(s) 47
MboI GATC 1 cut(s) 263
MboII GAAGA 2 cut(s) 138, 376
MflI RGATCY 1 cut(s) 263
MluCI AATT 1 cut(s) 468
MnlI CCTC 3 cut(s) 58, 122, 147
Mph1103I ATGCAT 2 cut(s) 244, 302
MseI TTAA 2 cut(s) 416, 498
MwoI GCNNNNNNNGC 4 cut(s) 53, 188, 218, 266
NdeII GATC 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 49, 250
NsiI ATGCAT 2 cut(s) 244, 302
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 5 cut(s) 97, 211, 413, 525, 528
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 4, 67
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 416, 498
SatI GCNGC 5 cut(s) 96, 210, 412, 524, 527
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 2 cut(s) 4, 67
SetI ASST 4 cut(s) 23, 69, 177, 338
SfaNI GCATC 2 cut(s) 309, 401
SfcI CTRYAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 67
Sse9I AATT 1 cut(s) 468
SsiI CCGC 3 cut(s) 47, 140, 411
SspI AATATT 2 cut(s) 115, 232
SspMI CTAG 4 cut(s) 216, 278, 396, 559
StyI CCWWGG 1 cut(s) 530
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 502
TaqII GACCGA 1 cut(s) 277
TasI AATT 1 cut(s) 468
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 416, 498
Tru9I TTAA 2 cut(s) 416, 498
TseFI GTSAC 2 cut(s) 49, 250
TseI GCWGC 4 cut(s) 95, 209, 523, 526
Tsp45I GTSAC 2 cut(s) 49, 250
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 468
XspI CTAG 4 cut(s) 216, 278, 396, 559
Zsp2I ATGCAT 2 cut(s) 244, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.