Rroxscaffold_1G00026390

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
33215150 .. 33231239
16090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026390.1

Sequence Viewer

Length: 438 bp
ATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCGAGAGACAATATGGCAAATGGGAAGACAATCTCCTTCAAGTTGGAAGAGAATGTGTTTGGCATCGAAAGGAAGCAATATCTGTTTAAGTCAAACATTCATGCATTGTGTATGATGACTGAACTATCGTGTGGTGTAATCGCATGTATATATGTAACCAAAACTGCAAAAGCAACAAAACGAGCCAAACAGAGGCTAATTCAAAACTCAAAAGTCCAACACGGAATTGATGGAGCCAAGCCTATTGTTGTCAACATTGGTGCCACTCCTCTCAATGGGGCTTCAAGCTGCATAACGACCTTTGAACTTCCTACAAACACTTATATATCACTGCATATCGACCAAATCAACAATAAAAGGAATGATTCAGCAATGCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

9.56

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 246, 329
AgsI TTSAA 5 cut(s) 37, 94, 257, 339, 359
AluBI AGCT 2 cut(s) 10, 342
AluI AGCT 2 cut(s) 10, 342
Alw26I GTCTC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 342
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 54
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 289, 316
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 329
Bse3DI GCAATG 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 246, 329
BseMI GCAATG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 246, 329
BsmAI GTCTC 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 289, 316
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 383
CviAII CATG 2 cut(s) 155, 198
CviJI RGCY 7 cut(s) 10, 239, 250, 290, 295, 335, 342
CviKI_1 RGCY 7 cut(s) 10, 239, 250, 290, 295, 335, 342
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 158, 201
FatI CATG 2 cut(s) 154, 197
Fnu4HI GCNGC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 158, 201
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 29, 158, 221, 345, 388
Hsp92II CATG 2 cut(s) 158, 201
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 3 cut(s) 16, 91, 113
MluCI AATT 2 cut(s) 252, 279
MmeI TCCRAC 2 cut(s) 78, 295
MnlI CCTC 2 cut(s) 240, 333
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 1 cut(s) 141
NlaIII CATG 2 cut(s) 158, 201
NlaIV GGNNCC 2 cut(s) 289, 316
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 201
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 289, 316
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 343
SetI ASST 4 cut(s) 12, 34, 344, 356
SfaNI GCATC 1 cut(s) 126
Sse9I AATT 2 cut(s) 252, 279
TaqI TCGA 2 cut(s) 120, 393
TasI AATT 2 cut(s) 252, 279
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 390
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 17, 143
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 390
XceI RCATGY 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.