Rroxscaffold_1G00063340

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
85228828 .. 85229777
950 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00063340.1

Sequence Viewer

Length: 366 bp
ATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACAGTTCCGATGGAAGAACCACCGCTGTTCCGTGGAAGAACCAGTCTGCAGTAGTTCATGAGAAGGTTGTTGAGTTGGTTGAAGTTACACGACAGTCTGAAGAGGAGAATATTAACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGACAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATCTGTTTAAGTCGGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGAGTAATCTCAATGTATATATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.23

Weight (kDa)

9.58

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 38, 319
AgsI TTSAA 3 cut(s) 119, 190, 247
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
BccI CCATC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 84
BmsI GCATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 227
Bsp1407I TGTACA 2 cut(s) 36, 317
BspACI CCGC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 5
BsrGI TGTACA 2 cut(s) 36, 317
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 41, 132
Bst6I CTCTTC 1 cut(s) 132
BstAUI TGTACA 2 cut(s) 36, 317
BstDSI CCRYGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 68
CciI TCATGA 1 cut(s) 94
Csp6I GTAC 2 cut(s) 37, 318
CviAII CATG 3 cut(s) 95, 154, 308
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
CviQI GTAC 2 cut(s) 37, 318
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 3 cut(s) 98, 157, 311
FaiI YATR 6 cut(s) 96, 155, 309, 357, 359, 361
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 94, 153, 307
Hin1II CATG 3 cut(s) 98, 157, 311
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 3 cut(s) 46, 136, 301
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 3 cut(s) 6, 94, 253
HpyCH4III ACNGT 2 cut(s) 41, 132
HpyCH4V TGCA 3 cut(s) 86, 182, 311
Hsp92II CATG 3 cut(s) 98, 157, 311
LpnPI CCDG 4 cut(s) 92, 192, 262, 321
LweI GCATC 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 6 cut(s) 34, 37, 63, 85, 149, 169
MluCI AATT 2 cut(s) 217, 247
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 2 cut(s) 133, 225
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 2 cut(s) 150, 294
MspA1I CMGCKG 1 cut(s) 62
NlaIII CATG 3 cut(s) 98, 157, 311
NsiI ATGCAT 1 cut(s) 313
PagI TCATGA 1 cut(s) 94
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 38, 319
RsaNI GTAC 2 cut(s) 37, 318
SaqAI TTAA 2 cut(s) 150, 294
SetI ASST 5 cut(s) 35, 105, 165, 187, 340
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 217, 247
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 148
TaaI ACNGT 2 cut(s) 41, 132
TaqI TCGA 1 cut(s) 273
TasI AATT 2 cut(s) 217, 247
TatI WGTACW 2 cut(s) 36, 317
Tru1I TTAA 2 cut(s) 150, 294
Tru9I TTAA 2 cut(s) 150, 294
TspDTI ATGAA 3 cut(s) 83, 170, 296
TspGWI ACGGA 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.