Rorug01G0094500

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
15551088 .. 15552464
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0094500.1

Sequence Viewer

Length: 1188 bp
ATGGAGGGAGGTTTTATAGTCAAGGGTGGTGGTGTTTTTGTGGATAGGGTTGACCCATCCAAATTGGGATTCAATGGCTTTAACTTCTGGGGCAATGATTTAGATAGCTATGATGACAAAATAGACCACCAACTATACATAGGCCATGTCATTGATGATTTAGAAGATGGGCCAAAAGTAATGATGAGTGAGCAGCAATCAGTAGTTCAGGATGGACCAATTCAAGTTGATGAGCTGCAACAAAGAAGGTTGGGGCCTGAGAATGTGGATTCTGTAATAGTTGGTATGCAACAAGTGGAGCTAAATGGGCCAGCAGCCAAACATAGGCCTAAAGATAAAGGGAAGCAAAAGATGGTTGTTGAAGACAGTGAAGTTCCAAAGAAGAAGAAAGGCAGACCTAAGAAAGAGCTGAAAATGAGGTATGACACAAGATTCAAAGGGAAGTGCTCCCATGCTCAAGAAGACTTATACGATGATGATGAATCTGATAGTTCATCAAGCTCAAAAGATCTGGATTATGACGCTATAGTCGGCAGTGATTATGAAATTTTTTATGAACATGATGTGGTACGTTTTCAAACAAACGTGGATGGTGATCTAAGCAAGCCTGAAGAATGGGAAGAGATGGGGTTTTCTGGTCATATTTCTGATGGTGATGGAGACGACTCAGATGGGCTTCATAGTTTAAATGGTGATTCAGATGAGAATGGTGAAGATGTTGGGAGGTTTAAAGTTAAGGGAAAGAAGATGTGGTCTAAATGGAAGGAGTTCAACAAGAAGTTTGACATGAAGAGGCCAAGTTTTGAACTCGGAATGGCATTTCCCAATTCTGTAGTGTTCAAAGATGCAATACGGAAGCATGCTGTATTGAGTAAAAAAGAGCTTCGTTTTGGTAAAAACACAAGGCAAAAGGTGAAGGTTATTTGCAAGACTTCTCCTGGGTGTCCATTTTGGATATATGCAGCAAGTCCAGATAAAAACACTCCAACTATGTACATTAGGACTTTGAGGATGGAGCACAAGTGTAGTGAACTCAAAGGCAGGGTATATCACTGTCATGCCCCTTTTATTGCTTCTGAGTATAGTGCAAGCTTCACAAATGATGAGAAATGGTCAAGCTGGAGGGTATTCAAACTGTTGTTGGCAAAGATTTTGGCATCAATGTTGGTTACTAAATGTGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

395

Amino Acids

44.94

Weight (kDa)

6.17

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 269 - 323 8.5e-08 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 630
AfaI GTAC 2 cut(s) 570, 995
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 9 cut(s) 73, 224, 362, 436, 578, 772, 806, 841, 1132
AjnI CCWGG 1 cut(s) 937
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 8 cut(s) 108, 235, 301, 409, 501, 883, 1092, 1119
AluI AGCT 8 cut(s) 108, 235, 301, 409, 501, 883, 1092, 1119
Alw21I GWGCWC 2 cut(s) 449, 1020
Alw26I GTCTC 1 cut(s) 654
AoxI GGCC 6 cut(s) 142, 170, 254, 308, 326, 794
ApeKI GCWGC 4 cut(s) 193, 235, 314, 962
ApoI RAATTY 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 170, 215, 254, 308
AsuHPI GGTGA 5 cut(s) 605, 665, 704, 722, 925
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 369, 468
Bbv12I GWGCWC 2 cut(s) 449, 1020
BbvI GCAGC 4 cut(s) 205, 222, 326, 974
BciT130I CCWGG 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 654
BfmI CTRYAG 2 cut(s) 525, 831
BglII AGATCT 1 cut(s) 508
BisI GCNGC 4 cut(s) 194, 236, 315, 963
BlsI GCNGC 4 cut(s) 195, 237, 316, 964
Bme1390I CCNGG 1 cut(s) 939
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 4 cut(s) 170, 215, 254, 308
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 939
BmsI GCATC 2 cut(s) 835, 1166
BpiI GAAGAC 2 cut(s) 369, 468
BpmI CTGGAG 1 cut(s) 1141
BpuEI CTTGAG 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 938
BsaXI ACNNNNNCTCC 2 cut(s) 1007, 1037
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 939
BseDI CCNNGG 1 cut(s) 938
BseGI GGATG 4 cut(s) 56, 217, 595, 1017
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 249, 681, 1068
BseXI GCAGC 4 cut(s) 205, 222, 326, 974
BshFI GGCC 6 cut(s) 144, 172, 256, 310, 328, 796
BsiHKAI GWGCWC 2 cut(s) 449, 1020
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 654
BsmBI CGTCTC 1 cut(s) 654
BsnI GGCC 6 cut(s) 144, 172, 256, 310, 328, 796
Bsp1286I GDGCHC 2 cut(s) 449, 1020
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 2 cut(s) 508, 595
BspANI GGCC 6 cut(s) 144, 172, 256, 310, 328, 796
BspCNI CTCAG 3 cut(s) 250, 680, 1069
BspLI GGNNCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 993
BssECI CCNNGG 1 cut(s) 938
BssMI GATC 2 cut(s) 508, 595
Bst2UI CCWGG 1 cut(s) 939
Bst4CI ACNGT 3 cut(s) 368, 1055, 1137
Bst6I CTCTTC 2 cut(s) 615, 785
BstAUI TGTACA 1 cut(s) 993
BstC8I GCNNGC 4 cut(s) 312, 605, 861, 1090
BstDEI CTNAG 5 cut(s) 258, 399, 599, 667, 1077
BstF5I GGATG 4 cut(s) 56, 217, 595, 1017
BstKTI GATC 2 cut(s) 511, 598
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 2 cut(s) 508, 595
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 939
BstNSI RCATGY 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 937
BstSFI CTRYAG 2 cut(s) 525, 831
BstV1I GCAGC 4 cut(s) 205, 222, 326, 974
BstV2I GAAGAC 2 cut(s) 369, 468
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 6 cut(s) 144, 172, 256, 310, 328, 796
BtsCI GGATG 4 cut(s) 56, 217, 595, 1017
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 373, 541, 1051
Cac8I GCNNGC 4 cut(s) 312, 605, 861, 1090
Cfr13I GGNCC 4 cut(s) 170, 215, 254, 308
CseI GACGC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 569, 994
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 6 cut(s) 146, 452, 560, 787, 860, 1058
CviQI GTAC 2 cut(s) 569, 994
DdeI CTNAG 5 cut(s) 258, 399, 599, 667, 1077
DpnI GATC 2 cut(s) 510, 597
DpnII GATC 2 cut(s) 508, 595
DraI TTTAAA 2 cut(s) 687, 730
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 615, 785
EarI CTCTTC 2 cut(s) 615, 785
Eco147I AGGCCT 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 6 cut(s) 149, 455, 563, 790, 863, 1061
FatI CATG 6 cut(s) 145, 451, 559, 786, 859, 1057
Fnu4HI GCNGC 4 cut(s) 194, 236, 315, 963
FokI GGATG 4 cut(s) 43, 224, 602, 1024
Fsp4HI GCNGC 4 cut(s) 194, 236, 315, 963
GluI GCNGC 4 cut(s) 194, 236, 315, 963
GsuI CTGGAG 1 cut(s) 1141
HaeIII GGCC 6 cut(s) 144, 172, 256, 310, 328, 796
HgaI GACGC 1 cut(s) 530
Hin1II CATG 6 cut(s) 149, 455, 563, 790, 863, 1061
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 1090
HinfI GANTC 6 cut(s) 69, 269, 432, 482, 665, 695
HphI GGTGA 5 cut(s) 605, 665, 704, 722, 925
Hpy166II GTNNAC 2 cut(s) 52, 1031
Hpy188I TCNGA 6 cut(s) 487, 649, 670, 700, 812, 1078
Hpy188III TCNNGA 4 cut(s) 209, 458, 512, 971
Hpy8I GTNNAC 2 cut(s) 52, 1031
HpyAV CCTTC 3 cut(s) 240, 757, 910
HpyCH4III ACNGT 3 cut(s) 368, 1055, 1137
HpyCH4IV ACGT 2 cut(s) 571, 585
HpyCH4V TGCA 6 cut(s) 238, 289, 848, 927, 962, 1088
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 5 cut(s) 258, 399, 599, 667, 1077
HpySE526I ACGT 2 cut(s) 571, 585
Hsp92II CATG 6 cut(s) 149, 455, 563, 790, 863, 1061
Kzo9I GATC 2 cut(s) 508, 595
LmnI GCTCC 3 cut(s) 298, 452, 1015
Lsp1109I GCAGC 4 cut(s) 205, 222, 326, 974
LweI GCATC 2 cut(s) 835, 1166
MaeII ACGT 2 cut(s) 571, 585
MaeIII GTNAC 1 cut(s) 1168
MalI GATC 2 cut(s) 510, 597
MboI GATC 2 cut(s) 508, 595
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 449, 1020
MluCI AATT 4 cut(s) 62, 219, 546, 826
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 1010
MnlI CCTC 5 cut(s) 411, 717, 786, 1002, 1116
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 4 cut(s) 81, 686, 729, 735
MslI CAYNNNNRTG 1 cut(s) 1056
MspR9I CCNGG 1 cut(s) 939
MvaI CCWGG 1 cut(s) 939
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeII GATC 2 cut(s) 508, 595
NlaIII CATG 6 cut(s) 149, 455, 563, 790, 863, 1061
NlaIV GGNNCC 1 cut(s) 255
NspI RCATGY 1 cut(s) 863
PaeI GCATGC 1 cut(s) 863
PceI AGGCCT 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 5 cut(s) 69, 269, 432, 482, 695
PkrI GCNGC 4 cut(s) 195, 237, 316, 964
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Psp6I CCWGG 1 cut(s) 937
PspGI CCWGG 1 cut(s) 937
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 4 cut(s) 170, 215, 254, 308
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 570, 995
RsaNI GTAC 2 cut(s) 569, 994
RseI CAYNNNNRTG 1 cut(s) 1056
SaqAI TTAA 4 cut(s) 81, 686, 729, 735
SatI GCNGC 4 cut(s) 194, 236, 315, 963
Sau3AI GATC 2 cut(s) 508, 595
Sau96I GGNCC 4 cut(s) 170, 215, 254, 308
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 1 cut(s) 939
SduI GDGCHC 2 cut(s) 449, 1020
SfaNI GCATC 2 cut(s) 835, 1166
SfcI CTRYAG 2 cut(s) 525, 831
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 1056
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
SphI GCATGC 1 cut(s) 863
Sse9I AATT 4 cut(s) 62, 219, 546, 826
SseBI AGGCCT 1 cut(s) 328
StuI AGGCCT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 937
TaaI ACNGT 3 cut(s) 368, 1055, 1137
TaiI ACGT 2 cut(s) 574, 588
TasI AATT 4 cut(s) 62, 219, 546, 826
TatI WGTACW 1 cut(s) 993
TfiI GAWTC 5 cut(s) 69, 269, 432, 482, 695
Tru1I TTAA 4 cut(s) 81, 686, 729, 735
Tru9I TTAA 4 cut(s) 81, 686, 729, 735
TscAI CASTG 3 cut(s) 373, 541, 1058
TseI GCWGC 4 cut(s) 193, 235, 314, 962
TspDTI ATGAA 6 cut(s) 483, 495, 558, 570, 668, 803
TspGWI ACGGA 1 cut(s) 868
TspRI CASTG 3 cut(s) 373, 541, 1058
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 546
XceI RCATGY 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.