Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

52222896 .. 52224001

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGGTTGGAAGCAAAAGTTGATGGGAAAACCCTTGTCATTGAGTCCCCTACGGCAGGCCAGAAGGACCTTGGTTCTGGACAAGGTAGTTGCTCCACTTTGCGGGAGAAGTGTGCATTACAAAAGATTGAGGACGCTGCTGGTATCTCTGCAAAGAAGCAGTTACACTTGGTGGATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAATGCAATTAGGCAGTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGACAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATCTGTTTAAGTCAGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGAGTAATCTCAATGTATATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

192

Amino Acids

21.4

Weight (kDa)

7.64

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	213, 532
AfiI	CCNNNNNNNGG	2 cut(s)	56, 102
AgsI	TTSAA	4 cut(s)	275, 319, 403, 460
AluBI	AGCT	2 cut(s)	236, 376
AluI	AGCT	2 cut(s)	236, 376
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	137, 236, 239
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	124, 223, 226
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	3 cut(s)	138, 237, 240
BlsI	GCNGC	3 cut(s)	139, 238, 241
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 102
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	56, 102
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	124, 223, 226
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	31, 440
BslI	CCNNNNNNNGG	2 cut(s)	56, 102
BsmFI	GGGAC	2 cut(s)	31, 440
BsnI	GGCC	1 cut(s)	60
Bsp1407I	TGTACA	2 cut(s)	211, 530
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	2 cut(s)	211, 530
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	317, 345
BstAUI	TGTACA	2 cut(s)	211, 530
BstC8I	GCNNGC	1 cut(s)	58
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	124, 223, 226
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	212, 531
CviAII	CATG	3 cut(s)	251, 367, 521
CviJI	RGCY	4 cut(s)	60, 236, 260, 376
CviKI_1	RGCY	4 cut(s)	60, 236, 260, 376
CviQI	GTAC	2 cut(s)	212, 531
DraIII	CACNNNGTG	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	317, 345
EarI	CTCTTC	2 cut(s)	317, 345
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	3 cut(s)	254, 370, 524
FaiI	YATR	6 cut(s)	252, 368, 522, 570, 572, 574
FaqI	GGGAC	2 cut(s)	31, 440
FatI	CATG	3 cut(s)	250, 366, 520
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	138, 237, 240
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	138, 237, 240
GluI	GCNGC	3 cut(s)	138, 237, 240
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	254, 370, 524
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	3 cut(s)	78, 251, 347
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	4 cut(s)	58, 181, 250, 466
HpyCH4V	TGCA	6 cut(s)	116, 152, 242, 334, 395, 524
Hsp92II	CATG	3 cut(s)	254, 370, 524
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	3 cut(s)	124, 223, 226
LweI	GCATC	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	162, 277
MboII	GAAGA	7 cut(s)	209, 212, 239, 331, 334, 362, 382
MluCI	AATT	3 cut(s)	335, 430, 460
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	124, 318, 346, 438
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	221
NlaIII	CATG	3 cut(s)	254, 370, 524
NlaIV	GGNNCC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	526
PagI	TCATGA	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	139, 238, 241
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	213, 532
RsaNI	GTAC	2 cut(s)	212, 531
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	3 cut(s)	138, 237, 240
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	53
SetI	ASST	9 cut(s)	8, 72, 88, 210, 219, 238, 378, 400, 553
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	335, 430, 460
SsiI	CCGC	1 cut(s)	103
SspI	AATATT	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	70
TaqI	TCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	335, 430, 460
TatI	WGTACW	2 cut(s)	211, 530
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseI	GCWGC	3 cut(s)	137, 236, 239
TspDTI	ATGAA	3 cut(s)	239, 383, 509
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.