Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0000695

Physical Location & Seq

Genomic Coordinates Reverse (-)

170802 .. 171758

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgtgttattgcataaaactggaacttaaagagttcgagtgcagattggctttagggtcgatcgacaatattgttgctattgctaccattgttgaagtggacactaattgtgaaaaccagacacttcatggtcttgctttggaagaagggaatgtacgagtgtcgattctacgtccacttgatcctcaagctaaggttccattcccagttaacgatgagatagttactgtcaaagatgctgttgggacttacattgcttggccaagggacctcatacttcaatcccttcccgacactatgaagaaacaaccaaataagtccagtaagggtttgaagaagaggaaaaggcaagtaggcattcctgaagaggagaatattgacatgaagaagctaccaaaagattaccttgcacctttgaagtggttgtggatttgggcaagggacaatttggcaaatgggaggacaatctccttcaatttggaacagaaagtgtttggcatcgacaggaagcattatctgtttaggtcagacattcatgcattgtgtacaatgactgaactatcaggtggagtaatctcaatgtatatatgctacttgcatgaagtcttgaagagagcaaagatgtcacacatggttagctttgtggacccttcacagattggagcagctggaagtggaaatacaacggaaagatcgcgttttctagcaaataggttcgcaactgtagagaagggccagatttttttgttgccgtataatgcagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

255

Amino Acids

28.83

Weight (kDa)

8.81

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405551
rosa_laevigata	RLG00000000512 RLG00000006283 RLG00000008110 RLG00000008280 RLG00000013435 RLG00000014038 RLG00000019487 RLG00000019783 RLG00000020425 RLG00000022555 RLG00000022693 RLG00000023047 RLG00000027683 RLG00000028941 RLG00000029255 RLG00000033981 RLG00000034375 RLG00000035055 RLG00000036983
rosa_multiflora	Rmu_sc0002070.1_g000038 Rmu_sc0002521.1_g000050 Rmu_sc0002986.1_g000060 Rmu_sc0003002.1_g000067 Rmu_sc0006244.1_g000030 Rmu_sc0009710.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002410 Rroxscaffold_1G00026380 Rroxscaffold_1G00026390 Rroxscaffold_1G00063340 Rroxscaffold_2G00089150 Rroxscaffold_2G00114500 Rroxscaffold_2G00155770 Rroxscaffold_3G00224480 Rroxscaffold_3G00243690 Rroxscaffold_3G00251260 Rroxscaffold_4G00298200 Rroxscaffold_4G00327440 Rroxscaffold_7G00192530
rosa_rugosa	Rorug01G0052300 Rorug01G0094500 Rorug03G0152700 Rorug03G0245200 Rorug03G0338800 Rorug03G0338900 Rorug04G0045100 Rorug04G0168400 Rorug04G0291600 Rorug07G0163300 Rorug07G0349700
rosa_samantha	Rh1AG146400 Rh1BG098400 Rh2CG327400 Rh3BG286300 Rh3BG323300 Rh4AG085300 Rh4AG137800 Rh4CG008600 Rh4CG032900 Rh4CG092500 Rh4CG180400 Rh4CG231200 Rh4CG274400 Rh4CG304800 Rh5AG384900 Rh5BG344700 Rh5CG355300 Rh6AG151000 Rh6BG302500 Rh6DG135900 Rh6DG138700 Rh6DG206300 Rh6DG319500 Rh7BG412300 Rh7CG476300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	697
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	156, 547
AgsI	TTSAA	6 cut(s)	95, 281, 334, 418, 475, 610
AluBI	AGCT	4 cut(s)	191, 391, 639, 668
AluI	AGCT	4 cut(s)	191, 391, 639, 668
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	260, 733
ApeKI	GCWGC	1 cut(s)	665
AspS9I	GGNCC	3 cut(s)	268, 646, 733
AvaII	GGWCC	2 cut(s)	268, 646
BalI	TGGCCA	1 cut(s)	262
BarI	GAAGNNNNNNTAC	4 cut(s)	138, 170, 664, 696
BbvI	GCAGC	1 cut(s)	677
BceAI	ACGGC	1 cut(s)	736
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme18I	GGWCC	2 cut(s)	268, 646
BmgT120I	GGNCC	3 cut(s)	268, 646, 733
BmiI	GGNNCC	3 cut(s)	198, 269, 648
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	226, 507
BmuI	ACTGGG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	24, 206, 321
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	24, 206, 321
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	262, 735
BsiEI	CGRYCG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	259, 281, 455
BsmFI	GGGAC	3 cut(s)	259, 281, 455
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	262, 735
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	60, 181, 692
BspANI	GGCC	2 cut(s)	262, 735
BspFNI	CGCG	1 cut(s)	697
BspLI	GGNNCC	3 cut(s)	198, 269, 648
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	24, 206, 321
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	3 cut(s)	60, 181, 692
BssT1I	CCWWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	229, 724
Bst6I	CTCTTC	3 cut(s)	332, 360, 605
BstAUI	TGTACA	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	697
BstKTI	GATC	3 cut(s)	63, 184, 695
BstMBI	GATC	3 cut(s)	60, 181, 692
BstMCI	CGRYCG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	677
BsuRI	GGCC	2 cut(s)	262, 735
Cfr13I	GGNCC	3 cut(s)	268, 646, 733
Csp6I	GTAC	2 cut(s)	155, 546
CviAII	CATG	5 cut(s)	128, 382, 536, 599, 631
CviJI	RGCY	7 cut(s)	50, 191, 262, 391, 639, 668, 735
CviKI_1	RGCY	7 cut(s)	50, 191, 262, 391, 639, 668, 735
CviQI	GTAC	2 cut(s)	155, 546
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	62, 183, 694
DpnII	GATC	3 cut(s)	60, 181, 692
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	3 cut(s)	332, 360, 605
EarI	CTCTTC	3 cut(s)	332, 360, 605
Eco130I	CCWWGG	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	268, 646
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	5 cut(s)	131, 385, 539, 602, 634
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	3 cut(s)	259, 281, 455
FatI	CATG	5 cut(s)	127, 381, 535, 598, 630
Fnu4HI	GCNGC	1 cut(s)	666
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	262, 735
Hin1II	CATG	5 cut(s)	131, 385, 539, 602, 634
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	211
Hpy166II	GTNNAC	5 cut(s)	100, 176, 211, 546, 646
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	3 cut(s)	290, 362, 607
Hpy8I	GTNNAC	5 cut(s)	100, 176, 211, 546, 646
HpyAV	CCTTC	5 cut(s)	140, 296, 481, 660, 724
HpyCH4III	ACNGT	2 cut(s)	229, 724
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	6 cut(s)	12, 42, 410, 539, 598, 761
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	5 cut(s)	131, 385, 539, 602, 634
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	60, 181, 692
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	2 cut(s)	226, 507
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	223, 624
MalI	GATC	3 cut(s)	62, 183, 694
MboI	GATC	3 cut(s)	60, 181, 692
MboII	GAAGA	7 cut(s)	155, 313, 346, 349, 377, 397, 622
MlsI	TGGCCA	1 cut(s)	262
MluCI	AATT	3 cut(s)	106, 445, 475
MluNI	TGGCCA	1 cut(s)	262
MnlI	CCTC	5 cut(s)	195, 281, 333, 361, 453
Mox20I	TGGCCA	1 cut(s)	262
Mph1103I	ATGCAT	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	262
MseI	TTAA	2 cut(s)	27, 210
Msp20I	TGGCCA	1 cut(s)	262
MspA1I	CMGCKG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	697
NdeII	GATC	3 cut(s)	60, 181, 692
NlaIII	CATG	5 cut(s)	131, 385, 539, 602, 634
NlaIV	GGNNCC	3 cut(s)	198, 269, 648
NmuCI	GTSAC	1 cut(s)	624
NsiI	ATGCAT	1 cut(s)	541
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	667
Ple19I	CGATCG	1 cut(s)	63
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	198, 269, 648
PspPI	GGNCC	3 cut(s)	268, 646, 733
PspPPI	RGGWCCY	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	2 cut(s)	156, 547
RsaNI	GTAC	2 cut(s)	155, 546
SaqAI	TTAA	2 cut(s)	27, 210
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	60, 181, 692
Sau96I	GGNCC	3 cut(s)	268, 646, 733
SfaNI	GCATC	2 cut(s)	226, 507
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	268, 646
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	106, 445, 475
SspI	AATATT	2 cut(s)	70, 376
SspMI	CTAG	1 cut(s)	704
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	229, 724
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	5 cut(s)	36, 59, 63, 164, 501
TasI	AATT	3 cut(s)	106, 445, 475
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	27, 210
Tru9I	TTAA	2 cut(s)	27, 210
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	5 cut(s)	116, 314, 398, 524, 615
TspGWI	ACGGA	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	268, 646
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 125
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.