Rh4AG137800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000695
Physical Location & Seq
Forward (+)
34991273 .. 35008315
17043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG137800.1

Sequence Viewer

Length: 606 bp
ATGTCTCCTTCAAAGACAATGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACACGAGCGAGGTCTACACCACAACTAGCAACTTCTGCAAAGAAGCAGTTACAGTTAGTGGATGAAATTGCGGAGGAAGTGAAAGACGATAAGGTTGTACATGTTCCGGTGGAAGAACCAGTTGCTGCAATAGTTGATGAGAAGGCTGTGAGGTCGGTTGAAGTTACACAGCAGAAACAGCAAGATAAGTCCAGTAAGGGTTTAAAAAAGAGGAAAAGGCAAGTAGATAATCCTGAAGAGGAGCATATTGATATAAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCGAGAGACAATATGGCAAATGGGAAGACAATCTCCTTCAAGTTGGAAGAGAAAGTGCTTGGCATCGAAAGAAAGCAATATCTGTTTAAGTCAGACATCCATGCATTGTGTATGATGACTGAACTATCAGGTGGTCTGTATCTACTGCTTGCAGAGCAGTTCATGGGACAAGAGTTATGTGTCGGTCCCATTGGATACAGGTCGGAGAGTCAAATTCTTGCGACACGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.7

Weight (kDa)

9.15

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AciI CCGC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 585
AcuI CTGAAG 1 cut(s) 321
AcvI CACGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 165
AflIII ACRYGT 3 cut(s) 166, 596, 598
AgsI TTSAA 5 cut(s) 12, 61, 227, 355, 412
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 9, 372
AlwNI CAGNNNCTG 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 23, 191
ApoI RAATTY 1 cut(s) 585
AspS9I GGNCC 1 cut(s) 557
AvaII GGWCC 1 cut(s) 557
BauI CACGAG 1 cut(s) 69
BbrPI CACGTG 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 10, 178
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 2 cut(s) 9, 372
BfaI CTAG 2 cut(s) 30, 92
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 2 cut(s) 24, 192
BlsI GCNGC 2 cut(s) 25, 193
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 559
BmsI GCATC 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 599
BsaWI WCCGGW 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 185, 258
BseGI GGATG 2 cut(s) 133, 468
BseNI ACTGG 2 cut(s) 185, 258
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 10, 178
BsgI GTGCAG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 543, 552
BsmAI GTCTC 2 cut(s) 9, 372
BsmFI GGGAC 2 cut(s) 543, 552
Bsp1407I TGTACA 1 cut(s) 163
BspACI CCGC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 2 cut(s) 185, 258
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 297, 414
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 522
BstF5I GGATG 2 cut(s) 133, 468
BstMAI GTCTC 2 cut(s) 9, 372
BstMWI GCNNNNNNNGC 4 cut(s) 32, 101, 244, 526
BstNSI RCATGY 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 10, 178
BstV2I GAAGAC 1 cut(s) 404
BsuI GTATCC 1 cut(s) 560
BtsCI GGATG 2 cut(s) 133, 468
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 557
Csp6I GTAC 1 cut(s) 164
CviAII CATG 3 cut(s) 167, 473, 535
CviJI RGCY 3 cut(s) 23, 212, 328
CviKI_1 RGCY 3 cut(s) 23, 212, 328
CviQI GTAC 1 cut(s) 164
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 297, 414
EarI CTCTTC 2 cut(s) 297, 414
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 321
Eco72I CACGTG 1 cut(s) 599
EcoT22I ATGCAT 2 cut(s) 58, 478
FaeI CATG 3 cut(s) 170, 476, 538
FaiI YATR 8 cut(s) 168, 312, 320, 386, 474, 485, 536, 550
FaqI GGGAC 2 cut(s) 543, 552
FatI CATG 3 cut(s) 166, 472, 534
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 24, 192
FokI GGATG 2 cut(s) 140, 455
Fsp4HI GCNGC 2 cut(s) 24, 192
FspBI CTAG 2 cut(s) 30, 92
GluI GCNGC 2 cut(s) 24, 192
HapII CCGG 1 cut(s) 173
Hin1II CATG 3 cut(s) 170, 476, 538
HinfI GANTC 1 cut(s) 580
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 466, 577
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 18, 202, 418
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 6 cut(s) 56, 104, 194, 347, 476, 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 101, 244, 526
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 3 cut(s) 170, 476, 538
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 186, 198, 271, 312, 357, 486, 556
Lsp1109I GCAGC 2 cut(s) 10, 178
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 30, 92
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 3 cut(s) 64, 114, 229
MboII GAAGA 4 cut(s) 191, 314, 409, 431
MluCI AATT 2 cut(s) 132, 585
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 2 cut(s) 396, 555
MnlI CCTC 5 cut(s) 69, 133, 210, 270, 298
Mph1103I ATGCAT 2 cut(s) 58, 478
MseI TTAA 3 cut(s) 269, 459, 604
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 4 cut(s) 32, 101, 244, 526
NlaIII CATG 3 cut(s) 170, 476, 538
NlaIV GGNNCC 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 2 cut(s) 58, 478
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PkrI GCNGC 2 cut(s) 25, 193
PleI GAGTC 1 cut(s) 588
PmaCI CACGTG 1 cut(s) 599
PmlI CACGTG 1 cut(s) 599
PpsI GAGTC 1 cut(s) 588
Ppu21I YACGTR 1 cut(s) 599
PscI ACATGT 1 cut(s) 166
PspCI CACGTG 1 cut(s) 599
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 557
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 269, 459, 604
SatI GCNGC 2 cut(s) 24, 192
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 1 cut(s) 589
SetI ASST 8 cut(s) 80, 162, 221, 330, 352, 505, 575, 601
SfaNI GCATC 1 cut(s) 444
SinI GGWCC 1 cut(s) 557
Sse9I AATT 2 cut(s) 132, 585
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 30, 92
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 601
TaqI TCGA 1 cut(s) 438
TaqII GACCGA 1 cut(s) 545
TasI AATT 2 cut(s) 132, 585
TatI WGTACW 1 cut(s) 163
Tru1I TTAA 3 cut(s) 269, 459, 604
Tru9I TTAA 3 cut(s) 269, 459, 604
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 23, 191
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 144, 523
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 1 cut(s) 585
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 2 cut(s) 30, 92
Zsp2I ATGCAT 2 cut(s) 58, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.