Rmu_sc0009710.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009710.1
OG0000695
Physical Location & Seq
Forward (+)
196 .. 738
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009710.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
atgcaattaggcagtcctgaagaggtgaaaattgacatgaagaagctaccaaaagattaccctgcacctttgaagtgcttgcggatttggacaagggacaatttggcaaatgggaggacaatctccttcaatttggaacagaaagtgtttggcatcgacaggaagcattatctgtttaggtcagacattcatgcattgtgtacaatgactgaactatcaggtggagtaatctcaatgtatatatgctacttgcatgaagtcttgaagagagcaaagatgtcacacatggttagctttgtggacccttcacagattggagcagctggaagtggaaatacaacggaaagatcgcgttttctagcaaataggttcacaactgcagagaagggccagatttttttgttgccgtatgtaatctcaatgtatatatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

9.35

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 352
AciI CCGC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 3 cut(s) 73, 130, 265
AluBI AGCT 3 cut(s) 46, 294, 323
AluI AGCT 3 cut(s) 46, 294, 323
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 301, 388
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 301
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbvI GCAGC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 391
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 301, 388
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 162
BseXI GCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 390
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 347
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 390
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 200
BssMI GATC 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 15, 260
BstAUI TGTACA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 80
BstFNI CGCG 1 cut(s) 352
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 378
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 301, 388
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 37, 191, 254, 286
CviJI RGCY 4 cut(s) 46, 294, 323, 390
CviKI_1 RGCY 4 cut(s) 46, 294, 323, 390
CviQI GTAC 1 cut(s) 201
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 15, 260
EarI CTCTTC 2 cut(s) 15, 260
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 196
FaeI CATG 4 cut(s) 40, 194, 257, 289
FaqI GGGAC 1 cut(s) 110
FatI CATG 4 cut(s) 36, 190, 253, 285
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 390
Hin1II CATG 4 cut(s) 40, 194, 257, 289
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 201, 301, 372
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 17, 262
Hpy8I GTNNAC 3 cut(s) 201, 301, 372
HpyAV CCTTC 3 cut(s) 136, 315, 379
HpyCH4V TGCA 5 cut(s) 4, 65, 194, 253, 380
Hsp92II CATG 4 cut(s) 40, 194, 257, 289
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 6 cut(s) 30, 75, 145, 204, 309, 404
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 279
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 3 cut(s) 32, 52, 277
MluCI AATT 4 cut(s) 5, 30, 100, 130
MnlI CCTC 2 cut(s) 16, 108
Mph1103I ATGCAT 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 323
MvnI CGCG 1 cut(s) 352
NdeII GATC 1 cut(s) 347
NlaIII CATG 4 cut(s) 40, 194, 257, 289
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 196
PkrI GCNGC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 301, 388
PstI CTGCAG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 301, 388
SetI ASST 8 cut(s) 27, 48, 70, 182, 223, 296, 325, 371
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 301
Sse9I AATT 4 cut(s) 5, 30, 100, 130
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 359
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 5, 30, 100, 130
TatI WGTACW 1 cut(s) 200
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 3 cut(s) 53, 179, 270
TspGWI ACGGA 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 301
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.