Rh6DG138700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000695
Physical Location & Seq
Forward (+)
19966144 .. 19969775
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG138700.1

Sequence Viewer

Length: 579 bp
ATGCATAGGATTGTGCGACGAAAAATTCTTGGAATTAAGCAAAAAGTCTTGTTTAACCAGAAGGGGGCGGCTTATGGTGCTGCAGCCAAGGAGATGCAGTCATATATCGGGGTACTAGGACGTACCAAGGCACCTATTTGGACACCTAGTTGGAAGCAAGTGCCAAAAGATCGTAAAAATAAAATTTGGCAGTGTGTTGAGAAACAACGGCCTAAGTCTGTTAAGGGTCTGAAGAAAAGGAAAAGGCCAGTAGAGGAGGATGAAGATGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCTGCACCGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAGATGGAAGATAAAGTTTTTGGCATCAACAGGAAGCATTATTTGTTTAAGGGAGACATTTATGCATTGTGTACCATGTCTGAACTATCTGGTGGAGTGATCTCCATTGGAATCAAAATTTACAATGCTCAGATGGATAGATGTGGCCAGAAATCTATAGTGTGGCATAACATAGGGGCAAGGTGCTGTGTTACTGTTGGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

192

Amino Acids

22.05

Weight (kDa)

9.89

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 3 cut(s) 24, 183, 489
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 3 cut(s) 114, 124, 445
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 283, 316
Alw26I GTCTC 2 cut(s) 333, 420
AlwI GGATC 1 cut(s) 279
AoxI GGCC 3 cut(s) 209, 245, 517
ApeKI GCWGC 2 cut(s) 80, 83
ApoI RAATTY 3 cut(s) 24, 183, 489
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 67, 95
BccI CCATC 2 cut(s) 370, 499
BceAI ACGGC 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 333, 420
BfaI CTAG 3 cut(s) 116, 147, 336
BfmI CTRYAG 2 cut(s) 81, 528
BisI GCNGC 3 cut(s) 69, 81, 84
BlsI GCNGC 3 cut(s) 70, 82, 85
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 2 cut(s) 84, 405
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 87, 126
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 87, 126
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 67, 95
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 3 cut(s) 211, 247, 519
BshNI GGYRCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 333, 420
BsnI GGCC 3 cut(s) 211, 247, 519
Bsp143I GATC 3 cut(s) 169, 271, 471
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 211, 247, 519
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 87, 126
BssMI GATC 3 cut(s) 169, 271, 471
BssT1I CCWWGG 2 cut(s) 87, 126
Bst4CI ACNGT 2 cut(s) 312, 568
BstDEI CTNAG 2 cut(s) 213, 501
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 3 cut(s) 172, 274, 474
BstMAI GTCTC 2 cut(s) 333, 420
BstMBI GATC 3 cut(s) 169, 271, 471
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSFI CTRYAG 2 cut(s) 81, 528
BstV1I GCAGC 2 cut(s) 67, 95
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 3 cut(s) 211, 247, 519
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
Csp6I GTAC 3 cut(s) 113, 123, 444
CviAII CATG 1 cut(s) 448
CviJI RGCY 6 cut(s) 71, 86, 211, 247, 335, 519
CviKI_1 RGCY 6 cut(s) 71, 86, 211, 247, 335, 519
CviQI GTAC 3 cut(s) 113, 123, 444
DdeI CTNAG 2 cut(s) 213, 501
DpnI GATC 3 cut(s) 171, 273, 473
DpnII GATC 3 cut(s) 169, 271, 471
EaeI YGGCCR 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 87, 126
Eco57I CTGAAG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 87, 126
EcoT22I ATGCAT 2 cut(s) 6, 439
ErhI CCWWGG 2 cut(s) 87, 126
FaeI CATG 1 cut(s) 451
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 69, 81, 84
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 69, 81, 84
FspBI CTAG 3 cut(s) 116, 147, 336
GluI GCNGC 3 cut(s) 69, 81, 84
HaeIII GGCC 3 cut(s) 211, 247, 519
Hin1II CATG 1 cut(s) 451
HinfI GANTC 1 cut(s) 483
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 4 cut(s) 231, 375, 454, 504
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 444
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 312, 568
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 4, 83, 97, 308, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 213, 501
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 451
Kzo9I GATC 3 cut(s) 169, 271, 471
LpnPI CCDG 6 cut(s) 71, 261, 318, 388, 447, 533
Lsp1109I GCAGC 2 cut(s) 67, 95
LweI GCATC 2 cut(s) 84, 405
MaeI CTAG 3 cut(s) 116, 147, 336
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 562
MalI GATC 3 cut(s) 171, 273, 473
MboI GATC 3 cut(s) 169, 271, 471
MboII GAAGA 4 cut(s) 244, 275, 295, 392
MflI RGATCY 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 5 cut(s) 24, 33, 183, 343, 489
MluNI TGGCCA 1 cut(s) 519
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 247, 250, 262, 351
Mox20I TGGCCA 1 cut(s) 519
Mph1103I ATGCAT 2 cut(s) 6, 439
MscI TGGCCA 1 cut(s) 519
MseI TTAA 4 cut(s) 36, 54, 222, 420
Msp20I TGGCCA 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 3 cut(s) 169, 271, 471
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 2 cut(s) 6, 439
PfeI GAWTC 1 cut(s) 483
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 3 cut(s) 70, 82, 85
PspN4I GGNNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 364
RsaI GTAC 3 cut(s) 114, 124, 445
RsaNI GTAC 3 cut(s) 113, 123, 444
SaqAI TTAA 4 cut(s) 36, 54, 222, 420
SatI GCNGC 3 cut(s) 69, 81, 84
Sau3AI GATC 3 cut(s) 169, 271, 471
SetI ASST 4 cut(s) 124, 136, 148, 557
SfaNI GCATC 2 cut(s) 84, 405
SfcI CTRYAG 2 cut(s) 81, 528
Sse9I AATT 5 cut(s) 24, 33, 183, 343, 489
SsiI CCGC 1 cut(s) 68
SspMI CTAG 3 cut(s) 116, 147, 336
StyI CCWWGG 2 cut(s) 87, 126
TaaI ACNGT 2 cut(s) 312, 568
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 276
TasI AATT 5 cut(s) 24, 33, 183, 343, 489
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 4 cut(s) 36, 54, 222, 420
Tru9I TTAA 4 cut(s) 36, 54, 222, 420
TscAI CASTG 1 cut(s) 197
TseI GCWGC 2 cut(s) 80, 83
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 197
Tth111I GACNNNGTC 1 cut(s) 364
XapI RAATTY 3 cut(s) 24, 183, 489
XspI CTAG 3 cut(s) 116, 147, 336
Zsp2I ATGCAT 2 cut(s) 6, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.