Rroxscaffold_7G00192530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000695
Physical Location & Seq
Forward (+)
33754951 .. 33756832
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192530.1

Sequence Viewer

Length: 597 bp
ATGCTTCGCCGAGGCGCTCTCGGAGCAAGTGCATGGCGACGCGTCATCGGTGATCTCGAGCCGCCCGGAGCTCATGCAATAGCCTATCCGGAGGCCAATGCTTATGAGAAGACCACAAAGCAAAAGGCCGAGGAGGTTGCTAACCCCGCAAAGAAGCGCTTAGAGTTAGTTGATGACATAGATGAGCAAATAGAAGAACAAAATGGCAGGGGGTTGCCGGTGGAAGTGGAAGCTGGTATAGAAGTAGCAGCTACTATAGAAGTGGCAGCTACTATAGAGCATGTTCATGCCACTCCTACGATGTTTGTACTTGCTCCTATTAAGTCGGTTGAAGTTACACAGAGAAACAACCAAATAAGGCCGCAGGTAAGGGTTCGAAGAAAAGGAAAAGGCAAACAGTTTGGTGATGAAGAGGAGTGTATTGACTTGAAGAAGCTGCCAAAAGATTACCCTTCACCTTTGAAGTGCTTGTGGTTGTGGGGGAGAGACGCACTAGCCAACGGGAAGACAATCTCTTTCATGCTAATAGATGAAGTATTTAGGATCAATAGGAAGCAATATCGTATAAAGGAGACATTCATGCATTGTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.36

Weight (kDa)

8.38

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AccII CGCG 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 3 cut(s) 62, 147, 362
AclWI GGATC 1 cut(s) 551
AfaI GTAC 1 cut(s) 309
AfeI AGCGCT 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 3 cut(s) 332, 430, 463
AluBI AGCT 5 cut(s) 71, 233, 251, 269, 436
AluI AGCT 5 cut(s) 71, 233, 251, 269, 436
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 480, 566
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 3 cut(s) 93, 126, 359
ApeKI GCWGC 3 cut(s) 248, 266, 436
AspLEI GCGC 2 cut(s) 17, 159
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 3 cut(s) 62, 416, 447
AsuII TTCGAA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 56
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 116, 512
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 260, 278, 423
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 480, 566
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 2 cut(s) 255, 273
BfoI RGCGCY 2 cut(s) 18, 160
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 5 cut(s) 62, 249, 267, 362, 437
BlsI GCNGC 5 cut(s) 63, 250, 268, 363, 438
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 66
BpiI GAAGAC 2 cut(s) 116, 512
BplI GAGNNNNNCTC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 10, 129
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 217
BseAI TCCGGA 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 10, 129
BseRI GAGGAG 2 cut(s) 146, 428
BseXI GCAGC 3 cut(s) 260, 278, 423
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 95, 128, 361
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 66, 89, 218
BsmAI GTCTC 2 cut(s) 480, 566
BsmBI CGTCTC 1 cut(s) 480
BsnI GGCC 3 cut(s) 95, 128, 361
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 73
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 52, 543
BspACI CCGC 3 cut(s) 62, 147, 362
BspANI GGCC 3 cut(s) 95, 128, 361
BspEI TCCGGA 1 cut(s) 88
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 593
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 10, 129
BssMI GATC 2 cut(s) 52, 543
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 2 cut(s) 18, 160
BstHHI GCGC 2 cut(s) 17, 159
BstKTI GATC 2 cut(s) 55, 546
BstMAI GTCTC 2 cut(s) 480, 566
BstMBI GATC 2 cut(s) 52, 543
BstMWI GCNNNNNNNGC 2 cut(s) 23, 146
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 255, 273
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 260, 278, 423
BstV2I GAAGAC 2 cut(s) 116, 512
BsuRI GGCC 3 cut(s) 95, 128, 361
BveI ACCTGC 1 cut(s) 355
CciI TCATGA 1 cut(s) 593
CfoI GCGC 2 cut(s) 17, 159
Cfr10I RCCGGY 1 cut(s) 217
CseI GACGC 3 cut(s) 31, 48, 497
Csp6I GTAC 1 cut(s) 308
CviAII CATG 7 cut(s) 33, 74, 281, 287, 520, 580, 594
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 160
DpnI GATC 2 cut(s) 54, 545
DpnII GATC 2 cut(s) 52, 543
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 7 cut(s) 36, 77, 284, 290, 523, 583, 597
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 7 cut(s) 32, 73, 280, 286, 519, 579, 593
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 5 cut(s) 62, 249, 267, 362, 437
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 5 cut(s) 62, 249, 267, 362, 437
FspBI CTAG 1 cut(s) 494
GlaI GCGC 2 cut(s) 16, 158
GluI GCNGC 5 cut(s) 62, 249, 267, 362, 437
HaeII RGCGCY 2 cut(s) 18, 160
HaeIII GGCC 3 cut(s) 95, 128, 361
HapII CCGG 3 cut(s) 66, 89, 218
HgaI GACGC 3 cut(s) 31, 48, 497
HhaI GCGC 2 cut(s) 17, 159
Hin1II CATG 7 cut(s) 36, 77, 284, 290, 523, 583, 597
Hin6I GCGC 2 cut(s) 15, 157
HinP1I GCGC 2 cut(s) 15, 157
HpaII CCGG 3 cut(s) 66, 89, 218
HphI GGTGA 3 cut(s) 62, 416, 447
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 56, 89, 594
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 32, 77, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 146
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 7 cut(s) 36, 77, 284, 290, 523, 583, 597
HspAI GCGC 2 cut(s) 15, 157
Kpn2I TCCGGA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 52, 543
LmnI GCTCC 3 cut(s) 23, 68, 319
LpnPI CCDG 6 cut(s) 79, 102, 193, 219, 231, 350
Lsp1109I GCAGC 3 cut(s) 260, 278, 423
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 54, 545
MboI GATC 2 cut(s) 52, 543
MboII GAAGA 6 cut(s) 121, 206, 390, 422, 442, 517
MhlI GDGCHC 1 cut(s) 73
MluI ACGCGT 1 cut(s) 40
MnlI CCTC 5 cut(s) 5, 85, 124, 127, 406
Mph1103I ATGCAT 1 cut(s) 585
MroI TCCGGA 1 cut(s) 88
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 3 cut(s) 66, 89, 218
MspR9I CCNGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 23, 146
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 52, 543
NlaIII CATG 7 cut(s) 36, 77, 284, 290, 523, 583, 597
NmeAIII GCCGAG 2 cut(s) 35, 154
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 5 cut(s) 63, 250, 268, 363, 438
Psp124BI GAGCTC 1 cut(s) 73
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 5 cut(s) 62, 249, 267, 362, 437
Sau3AI GATC 2 cut(s) 52, 543
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 73
SetI ASST 8 cut(s) 73, 138, 235, 253, 271, 369, 438, 460
SfcI CTRYAG 2 cut(s) 255, 273
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 376
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 3 cut(s) 62, 147, 362
SspMI CTAG 1 cut(s) 494
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 57, 376
TatI WGTACW 1 cut(s) 307
TauI GCSGC 2 cut(s) 64, 364
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseI GCWGC 3 cut(s) 248, 266, 436
TspDTI ATGAA 6 cut(s) 275, 423, 508, 546, 568, 582
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.