Rh4CG092500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000695
Physical Location & Seq
Forward (+)
16764733 .. 16776616
11884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG092500.1

Sequence Viewer

Length: 801 bp
ATGTGGATAAAGGCACGGCAGGATAAACACGGCAACTTCAAAGATGTTGAGGTAGAGAAGTGTGCCGCAGACATAGAAAAGCTGAAGAGACAAGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTGTAGTAGTTCATGAGAAGGCTATTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAGTAAGGGTCTGAAGAAGAGGAAAATGCAATTAGGCAGTCCTGAAGAGGTGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGACAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATCTGTTTAGGTCAGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGTGTAATCTCAATGTTTATATGGGCCCTGAGAGTGGGGTCGAGGCTGGTGTATTTGTACTTGACCTTTAAGACGGTGTTGTCGAGAGCGACGCCGGCGATGATATTGGTGGAAATCAGGAGGAGGAAGAGAAGAAGAAAGCTCCGGCATGAGGTTGTGAGAGTGAGCGTGACTGTTTTCATGGCAGAAGACGACGTCACTGAAATTGAAGTTGAAGAAGAGCTTGGTACTGGAGGTGGATTGTTTTTGGATGGTGAGCTTGGTAGTGGTAGTGGTAGTGGTAGTGGTAGTGGAGAGCTCGGTAGTGGTGGTGGAGAGCTCGGTTGTGGTGGATTTTGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

8.57

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 535
AatII GACGTC 1 cut(s) 654
AciI CCGC 1 cut(s) 66
AcuI CTGAAG 3 cut(s) 104, 242, 273
AcyI GRCGYC 2 cut(s) 548, 651
AfaI GTAC 4 cut(s) 117, 436, 515, 685
AfiI CCNNNNNNNGG 2 cut(s) 490, 607
AgsI TTSAA 6 cut(s) 40, 179, 307, 364, 665, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 8 cut(s) 82, 140, 280, 598, 679, 715, 754, 775
AluI AGCT 8 cut(s) 82, 140, 280, 598, 679, 715, 754, 775
Alw21I GWGCWC 2 cut(s) 756, 777
Alw26I GTCTC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 480
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 480, 481
AsuHPI GGTGA 2 cut(s) 271, 722
BaeGI GKGCMC 1 cut(s) 484
BanII GRGCYC 3 cut(s) 484, 756, 777
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 756, 777
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 701
BceAI ACGGC 2 cut(s) 32, 46
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 2 cut(s) 66, 141
BlsI GCNGC 2 cut(s) 67, 142
BmgT120I GGNCC 2 cut(s) 480, 481
BmiI GGNNCC 2 cut(s) 123, 482
BmsI GCATC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 708
BsaHI GRCGYC 2 cut(s) 548, 651
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 607
Bse118I RCCGGY 1 cut(s) 550
Bse1I ACTGG 2 cut(s) 210, 691
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 2 cut(s) 490, 607
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 2 cut(s) 210, 691
BseRI GAGGAG 1 cut(s) 592
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 2 cut(s) 756, 777
BsiSI CCGG 3 cut(s) 125, 551, 601
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 490, 607
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 482
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 484, 756, 777
Bsp1407I TGTACA 2 cut(s) 115, 434
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 477
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 123, 482
BspQI GCTCTTC 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 550
BsrGI TGTACA 2 cut(s) 115, 434
BsrI ACTGG 2 cut(s) 210, 691
BssAI RCCGGY 1 cut(s) 550
BssNI GRCGYC 2 cut(s) 548, 651
Bst4CI ACNGT 2 cut(s) 532, 631
Bst6I CTCTTC 5 cut(s) 80, 221, 249, 578, 669
BstACI GRCGYC 2 cut(s) 548, 651
BstAUI TGTACA 2 cut(s) 115, 434
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 712
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 651
BsuRI GGCC 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 2 cut(s) 480, 481
CseI GACGC 1 cut(s) 556
Csp6I GTAC 4 cut(s) 116, 435, 514, 684
CviAII CATG 5 cut(s) 155, 271, 425, 605, 637
CviQI GTAC 4 cut(s) 116, 435, 514, 684
DdeI CTNAG 1 cut(s) 485
DrdI GACNNNNNNGTC 1 cut(s) 535
DseDI GACNNNNNNGTC 1 cut(s) 535
Eam1104I CTCTTC 5 cut(s) 80, 221, 249, 578, 669
EarI CTCTTC 5 cut(s) 80, 221, 249, 578, 669
Ecl136II GAGCTC 2 cut(s) 754, 775
Eco24I GRGCYC 3 cut(s) 484, 756, 777
Eco53kI GAGCTC 2 cut(s) 754, 775
Eco57I CTGAAG 3 cut(s) 104, 242, 273
EcoICRI GAGCTC 2 cut(s) 754, 775
EcoO109I RGGNCCY 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 3 cut(s) 484, 756, 777
FaeI CATG 5 cut(s) 158, 274, 428, 608, 640
FaiI YATR 8 cut(s) 74, 156, 272, 426, 476, 478, 606, 638
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 344
FatI CATG 5 cut(s) 154, 270, 424, 604, 636
Fnu4HI GCNGC 2 cut(s) 66, 141
FokI GGATG 1 cut(s) 719
FriOI GRGCYC 3 cut(s) 484, 756, 777
Fsp4HI GCNGC 2 cut(s) 66, 141
GluI GCNGC 2 cut(s) 66, 141
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 1 cut(s) 482
HapII CCGG 3 cut(s) 125, 551, 601
HgaI GACGC 1 cut(s) 556
Hin1I GRCGYC 2 cut(s) 548, 651
Hin1II CATG 5 cut(s) 158, 274, 428, 608, 640
HpaII CCGG 3 cut(s) 125, 551, 601
HphI GGTGA 2 cut(s) 271, 722
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 2 cut(s) 222, 418
Hpy188III TCNNGA 4 cut(s) 155, 251, 540, 574
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 2 cut(s) 550, 653
HpyAV CCTTC 2 cut(s) 154, 370
HpyCH4III ACNGT 2 cut(s) 532, 631
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 3 cut(s) 238, 299, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 2 cut(s) 548, 651
Hsp92II CATG 5 cut(s) 158, 274, 428, 608, 640
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 396
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 181, 625, 652
MhlI GDGCHC 3 cut(s) 484, 756, 777
MluCI AATT 4 cut(s) 239, 334, 364, 660
MnlI CCTC 9 cut(s) 43, 222, 250, 342, 492, 570, 573, 601, 683
Mph1103I ATGCAT 1 cut(s) 430
MreI CGCCGGCG 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 550
MseI TTAA 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 3 cut(s) 125, 551, 601
MwoI GCNNNNNNNGC 1 cut(s) 551
NaeI GCCGGC 1 cut(s) 552
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 5 cut(s) 158, 274, 428, 608, 640
NlaIV GGNNCC 2 cut(s) 123, 482
NmuCI GTSAC 2 cut(s) 625, 652
NsiI ATGCAT 1 cut(s) 430
PagI TCATGA 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PdiI GCCGGC 1 cut(s) 552
PflFI GACNNNGTC 1 cut(s) 650
PkrI GCNGC 2 cut(s) 67, 142
Psp124BI GAGCTC 2 cut(s) 756, 777
PspN4I GGNNCC 2 cut(s) 123, 482
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 2 cut(s) 480, 481
PstNI CAGNNNCTG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 4 cut(s) 117, 436, 515, 685
RsaNI GTAC 4 cut(s) 116, 435, 514, 684
SacI GAGCTC 2 cut(s) 756, 777
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 2 cut(s) 66, 141
Sau96I GGNCC 2 cut(s) 480, 481
SduI GDGCHC 3 cut(s) 484, 756, 777
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 550
Sse9I AATT 4 cut(s) 239, 334, 364, 660
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 265
SstI GAGCTC 2 cut(s) 756, 777
TaaI ACNGT 2 cut(s) 532, 631
TaiI ACGT 1 cut(s) 654
TaqI TCGA 3 cut(s) 390, 497, 539
TasI AATT 4 cut(s) 239, 334, 364, 660
TatI WGTACW 3 cut(s) 115, 434, 513
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 625, 652
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 625, 652
TspDTI ATGAA 4 cut(s) 143, 287, 413, 625
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 650
ZraI GACGTC 1 cut(s) 652
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.