RLG00000014038

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
46057248 .. 46059735
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014038

Sequence Viewer

Length: 465 bp
ATGGCTCCTTCAAAATCTAGGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATGGAAAGTGACAAAAGCGAGATATGCAACAGAACTAGCATCTTCTGGCCAGAAGGACCTTGGTTCTGGACAAGGTAGTTACTTCACTTTGCGGGAGAAGTGTGCATTACAAAAGATTGAGGACGGTGCTGGTATCTCTGCAAAGAAGCGGTTAGACTTAGTGGACGACATTGCGAAGGAAGTAGAAGAAGATAAGGTTGTACAGGTTCTGGTGGAAGAACCAGCTGCTGCAGTAGTTCATGAGCAAGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAATAAGGGTTTGAAGAAGAAGAAAAGGCAAGTAGGCATTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

9.26

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 148, 205
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 4 cut(s) 12, 320, 364, 448
AluBI AGCT 3 cut(s) 281, 305, 421
AluI AGCT 3 cut(s) 281, 305, 421
AlwNI CAGNNNCTG 2 cut(s) 265, 284
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 23, 281, 284
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 105
BbvI GCAGC 3 cut(s) 10, 268, 271
BfaI CTAG 3 cut(s) 18, 30, 92
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 3 cut(s) 24, 282, 285
BlsI GCNGC 3 cut(s) 25, 283, 286
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 10, 268, 271
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 256
BspACI CCGC 2 cut(s) 148, 205
BspANI GGCC 1 cut(s) 105
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 32, 80
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 10, 268, 271
BsuRI GGCC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 2 cut(s) 265, 284
CciI TCATGA 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 257
CviAII CATG 3 cut(s) 57, 296, 412
CviJI RGCY 6 cut(s) 5, 23, 105, 281, 305, 421
CviKI_1 RGCY 6 cut(s) 5, 23, 105, 281, 305, 421
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 60, 299, 415
FaiI YATR 4 cut(s) 58, 81, 297, 413
FatI CATG 3 cut(s) 56, 295, 411
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 24, 282, 285
Fsp4HI GCNGC 3 cut(s) 24, 282, 285
FspBI CTAG 3 cut(s) 18, 30, 92
GluI GCNGC 3 cut(s) 24, 282, 285
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 3 cut(s) 60, 299, 415
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 123, 296, 392
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 18, 103, 226
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 6 cut(s) 56, 83, 161, 197, 287, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 80
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 3 cut(s) 60, 299, 415
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 87, 108, 119, 171, 245, 251, 291, 405, 450
Lsp1109I GCAGC 3 cut(s) 10, 268, 271
LweI GCATC 1 cut(s) 104
MaeI CTAG 3 cut(s) 18, 30, 92
MaeIII GTNAC 3 cut(s) 64, 134, 322
MboII GAAGA 9 cut(s) 90, 254, 257, 284, 376, 379, 382, 407, 427
MlsI TGGCCA 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 105
MnlI CCTC 2 cut(s) 169, 391
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 58
MscI TGGCCA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 32, 80
NlaIII CATG 3 cut(s) 60, 299, 415
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 58
PagI TCATGA 1 cut(s) 295
PctI GAATGC 1 cut(s) 387
PkrI GCNGC 3 cut(s) 25, 283, 286
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 2 cut(s) 265, 284
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SatI GCNGC 3 cut(s) 24, 282, 285
Sau96I GGNCC 1 cut(s) 112
SetI ASST 8 cut(s) 117, 133, 255, 264, 283, 307, 423, 445
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 112
SsiI CCGC 2 cut(s) 148, 205
SspI AATATT 2 cut(s) 46, 406
SspMI CTAG 3 cut(s) 18, 30, 92
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 182
TatI WGTACW 1 cut(s) 256
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 23, 281, 284
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 284, 428
VpaK11BI GGWCC 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 3 cut(s) 18, 30, 92
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.