RLG00000034375

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
41624588 .. 41627150
2563 bp
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UTR
Exon/CDS
Intron
RLM00000034375

Sequence Viewer

Length: 594 bp
ATGGCTACCACTAGAGCAAGGCAGAGTATTATCAATGCATTGAAAGTGACACGAGCAAGGTCTGCACCACAACTAACAACTTCTGGTCAGTCAAATGCATCAGAAAATAAGTCATCACCAAAGAGAGCAATGACATCGCTTATGTCGCTAAGGGTCAAGAAGTCCCTGACGAAGAATAACAAGAAAAAATCATCAAAGGCATCCAGCCCAGAAAAAAGCGGCTTGAAGTTGCTGAAGCGTGGTTGTGTTACAATGCACAAGATTTTAGTGGATGACATTGCCAAGGAAGTGGAAGAAGATAAGGTTGTACATGTTCTGGTGGAAGAACCAGCTGCTGCAATAGTTGATGAGAAGGCTGTGAGGTCGGTTGAAGTTACACAGCAGAAACAGCAAAATAAGTCTAGTAAGAGTTTAAAAAAGAGGAAAAGGCAAGTAGATAATCTTGAAGAAGAGTATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGTGAGAGACAATATGGCAAATGGGAAGACAATCTCCTTCAAGTTGGAAGAGAAAGTGTTTGGCATCGAAAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

10.03

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 6 cut(s) 43, 226, 371, 446, 499, 556
AluBI AGCT 2 cut(s) 332, 472
AluI AGCT 2 cut(s) 332, 472
Alw26I GTCTC 1 cut(s) 516
AlwNI CAGNNNCTG 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 332, 335
AsuHPI GGTGA 2 cut(s) 108, 529
BauI CACGAG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 2 cut(s) 319, 322
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 12, 402
BisI GCNGC 3 cut(s) 220, 333, 336
BlsI GCNGC 3 cut(s) 221, 334, 337
BmsI GCATC 3 cut(s) 107, 209, 588
BpiI GAAGAC 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 135, 276
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 200, 277
BseMI GCAATG 2 cut(s) 135, 276
BseXI GCAGC 2 cut(s) 319, 322
BsgI GTGCAG 2 cut(s) 48, 474
BslFI GGGAC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 307
BspACI CCGC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 135, 276
BsrGI TGTACA 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 282
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 444, 558
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 200, 277
BstMAI GTCTC 1 cut(s) 516
BstMWI GCNNNNNNNGC 3 cut(s) 62, 145, 388
BstNSI RCATGY 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 319, 322
BstV2I GAAGAC 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 200, 277
CaiI CAGNNNCTG 1 cut(s) 335
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 311, 463
CviJI RGCY 6 cut(s) 5, 207, 222, 332, 356, 472
CviKI_1 RGCY 6 cut(s) 5, 207, 222, 332, 356, 472
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 149
DraI TTTAAA 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 444, 558
EarI CTCTTC 2 cut(s) 444, 558
Eco130I CCWWGG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 2 cut(s) 40, 100
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 314, 466
FaiI YATR 5 cut(s) 143, 312, 456, 464, 530
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 310, 462
Fnu4HI GCNGC 3 cut(s) 220, 333, 336
FokI GGATG 2 cut(s) 187, 284
Fsp4HI GCNGC 3 cut(s) 220, 333, 336
FspBI CTAG 2 cut(s) 12, 402
GluI GCNGC 3 cut(s) 220, 333, 336
Hin1II CATG 2 cut(s) 314, 466
HphI GGTGA 2 cut(s) 108, 529
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 157, 443
HpyAV CCTTC 2 cut(s) 346, 562
HpyCH4V TGCA 6 cut(s) 38, 65, 98, 256, 338, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 145, 388
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 2 cut(s) 314, 466
LpnPI CCDG 7 cut(s) 69, 179, 217, 222, 302, 342, 501
Lsp1109I GCAGC 2 cut(s) 319, 322
LweI GCATC 3 cut(s) 107, 209, 588
MaeI CTAG 2 cut(s) 12, 402
MaeIII GTNAC 3 cut(s) 46, 247, 373
MboII GAAGA 9 cut(s) 184, 305, 308, 335, 458, 461, 478, 553, 575
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 2 cut(s) 354, 414
Mph1103I ATGCAT 2 cut(s) 40, 100
MseI TTAA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 62, 145, 388
NlaIII CATG 2 cut(s) 314, 466
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 2 cut(s) 40, 100
NspI RCATGY 1 cut(s) 314
PciI ACATGT 1 cut(s) 310
PkrI GCNGC 3 cut(s) 221, 334, 337
PscI ACATGT 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 3 cut(s) 220, 333, 336
SetI ASST 6 cut(s) 62, 306, 334, 365, 474, 496
SfaNI GCATC 3 cut(s) 107, 209, 588
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 12, 402
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 582
TatI WGTACW 1 cut(s) 307
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 332, 335
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 479
XceI RCATGY 1 cut(s) 314
XspI CTAG 2 cut(s) 12, 402
Zsp2I ATGCAT 2 cut(s) 40, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.