Rroxscaffold_3G00224480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000695
Physical Location & Seq
Reverse (-)
7683886 .. 7691280
7395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224480.1

Sequence Viewer

Length: 408 bp
ATGAAGACTGGTAAGGGTTTGAAGAAAAGGAAAAGGGTAGTAGCCATTGATGAAGAGGAGTTATTTATCGACTTCAAGAAGCTGCCGAAAGATTACCCGGTAGCGTGCAAGTGCTTGTGGTTGTGGGCGAAAGACAATTTGGCAAATGGGAAGACAATCTCCTTTCGATGGAAGACAAAGTTTTTGGCATCAACAAAAAGCAATATGTGTTTAAGGGAGATATTCATGCCTTGTGTACCATGGGTGAATTACAATGAAATTTCACCAGAAAACCATTGTCCGACAATTGAGCACAAAAATCAAGTGAAAAAACTGTTGTCCGAGTTTAAGCTACGGAAATGGATTCGTGTCCGCCGCCTCCCATTTGTCCTTTCGAGTAACCTCGCAAGCAAAGACTCAACTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.94

Weight (kDa)

9.95

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 352, 355
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 22, 76
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 82, 331
AluI AGCT 2 cut(s) 82, 331
Alw21I GWGCWC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 255, 256
BbsI GAAGAC 3 cut(s) 11, 158, 179
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 162
BcnI CCSGG 1 cut(s) 98
BisI GCNGC 2 cut(s) 83, 355
BlsI GCNGC 2 cut(s) 84, 356
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 3 cut(s) 11, 158, 179
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 2 cut(s) 352, 355
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 106, 388
BstDSI CCRYGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 3 cut(s) 11, 158, 179
BtgI CCRYGG 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 106, 388
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 226, 240
CviJI RGCY 3 cut(s) 44, 82, 331
CviKI_1 RGCY 3 cut(s) 44, 82, 331
CviQI GTAC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 2 cut(s) 229, 243
FaiI YATR 3 cut(s) 206, 227, 241
FatI CATG 2 cut(s) 225, 239
Fnu4HI GCNGC 2 cut(s) 83, 355
Fsp4HI GCNGC 2 cut(s) 83, 355
GluI GCNGC 2 cut(s) 83, 355
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 229, 243
HinfI GANTC 2 cut(s) 343, 395
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 255, 256
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 282, 322
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 108
Hsp92II CATG 2 cut(s) 229, 243
LpnPI CCDG 2 cut(s) 111, 279
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 377
MboII GAAGA 5 cut(s) 16, 34, 65, 163, 184
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 4 cut(s) 136, 247, 258, 285
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 3 cut(s) 49, 368, 392
MseI TTAA 2 cut(s) 212, 327
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 285
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 239
NlaIII CATG 2 cut(s) 229, 243
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 84, 356
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 212, 327
SatI GCNGC 2 cut(s) 83, 355
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 294
SetI ASST 3 cut(s) 84, 333, 384
SfaNI GCATC 1 cut(s) 197
Sse9I AATT 4 cut(s) 136, 247, 258, 285
SsiI CCGC 2 cut(s) 352, 355
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 3 cut(s) 69, 166, 374
TasI AATT 4 cut(s) 136, 247, 258, 285
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 212, 327
Tru9I TTAA 2 cut(s) 212, 327
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 4 cut(s) 17, 66, 214, 270
TspGWI ACGGA 1 cut(s) 349
XapI RAATTY 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.