RLG00000019487

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000695
Physical Location & Seq
Forward (+)
52630590 .. 52632747
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019487

Sequence Viewer

Length: 705 bp
ATGAGGTTGGAAGAAAAATTTGACCGGAGGGCCCTTCCCATTGAGTCGCCTCCAGCAGGCCATGTTACCAAGGACCTTGGTTCTGGACAAGGTAGCTGCTCCAATTTGCTGGAGAAGTGTGCTCTTCAAAAGGTTGAAGATCTTGTTGTCAATGCAAAGAAGCGTTTGGAGTTAGAGGATGATGTTAGGGAGAAAATACAAGAAGAAAATGTTGTAAAGCTGGTGGTGGAAGAACCAATGCCTATAAAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGAAACAACAGCCTAAGTCTGTTAAGGGTCTGAAGAAGAGGAAAAGGCCAGTAGACGAGGATGAAGAGGAGGATCTCGACTTGAAGAAACTGCCAAAAGATTACCCTGCACCGTTGAAATGCTTGTGGTTATGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAGATGGAAGATAAAGTTTTTGGCATCAACAGGAAGCAATATTTGTTTAAGGGAGACATTTATGCGTTGTGTACCATGTCTGAACTGTCTGGTAGAGTGATCTCCATGTATATTCTGTTCATAATTTGTACTTGGTATATACATATGATGTGGCAGCGGCGATTGGAATTGGTTTACACCCAAAAGGATCTTGATGATGTGAGGTCAGAGTGGGCAAAGTTTGTCTTGAAGTATCATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

27.43

Weight (kDa)

7.58

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AciI CCGC 1 cut(s) 619
AclWI GGATC 2 cut(s) 369, 657
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 2 cut(s) 535, 592
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 6 cut(s) 128, 137, 254, 373, 406, 691
AluBI AGCT 2 cut(s) 96, 220
AluI AGCT 2 cut(s) 96, 220
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 423, 510
AlwI GGATC 2 cut(s) 369, 657
AoxI GGCC 3 cut(s) 30, 58, 335
ApaI GGGCCC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 96, 616
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 30, 31, 73
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 83, 628
BccI CCATC 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 423, 510
BfaI CTAG 1 cut(s) 426
BglII AGATCT 1 cut(s) 139
BisI GCNGC 3 cut(s) 97, 617, 620
BlsI GCNGC 3 cut(s) 98, 618, 621
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 30, 31, 73
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 36, 131
BsaJI CCNNGG 2 cut(s) 69, 76
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 69, 76
BseGI GGATG 2 cut(s) 184, 355
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 2 cut(s) 83, 628
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 3 cut(s) 32, 60, 337
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 423, 510
BsnI GGCC 3 cut(s) 32, 60, 337
Bsp120I GGGCCC 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 34, 124
Bsp143I GATC 4 cut(s) 139, 361, 561, 649
BspACI CCGC 1 cut(s) 619
BspANI GGCC 3 cut(s) 32, 60, 337
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 369, 657
BspQI GCTCTTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 69, 76
BssMI GATC 4 cut(s) 139, 361, 561, 649
BssT1I CCWWGG 2 cut(s) 69, 76
Bst4CI ACNGT 2 cut(s) 402, 549
Bst6I CTCTTC 3 cut(s) 129, 320, 348
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 184, 355
BstKTI GATC 4 cut(s) 142, 364, 564, 652
BstMAI GTCTC 2 cut(s) 423, 510
BstMBI GATC 4 cut(s) 139, 361, 561, 649
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 83, 628
BstX2I RGATCY 3 cut(s) 139, 361, 649
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 3 cut(s) 139, 361, 649
BsuRI GGCC 3 cut(s) 32, 60, 337
BtsCI GGATG 2 cut(s) 184, 355
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 30, 31, 73
Csp6I GTAC 2 cut(s) 534, 591
CviAII CATG 4 cut(s) 62, 538, 568, 698
CviJI RGCY 8 cut(s) 32, 60, 96, 220, 263, 301, 337, 425
CviKI_1 RGCY 8 cut(s) 32, 60, 96, 220, 263, 301, 337, 425
CviQI GTAC 2 cut(s) 534, 591
DdeI CTNAG 1 cut(s) 303
DpnI GATC 4 cut(s) 141, 363, 563, 651
DpnII GATC 4 cut(s) 139, 361, 561, 649
Eam1104I CTCTTC 3 cut(s) 129, 320, 348
EarI CTCTTC 3 cut(s) 129, 320, 348
Eco130I CCWWGG 2 cut(s) 69, 76
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoO109I RGGNCCY 3 cut(s) 30, 31, 73
EcoT14I CCWWGG 2 cut(s) 69, 76
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 69, 76
FaeI CATG 4 cut(s) 65, 541, 571, 701
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FatI CATG 4 cut(s) 61, 537, 567, 697
FauNDI CATATG 1 cut(s) 606
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 97, 617, 620
FokI GGATG 2 cut(s) 191, 362
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 97, 617, 620
FspBI CTAG 1 cut(s) 426
GluI GCNGC 3 cut(s) 97, 617, 620
GsuI CTGGAG 2 cut(s) 36, 131
HaeIII GGCC 3 cut(s) 32, 60, 337
HapII CCGG 1 cut(s) 25
Hin1II CATG 4 cut(s) 65, 541, 571, 701
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 343, 534, 637
Hpy188I TCNGA 4 cut(s) 321, 465, 544, 670
Hpy188III TCNNGA 4 cut(s) 84, 365, 653, 688
Hpy8I GTNNAC 3 cut(s) 343, 534, 637
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 402, 549
HpyCH4V TGCA 3 cut(s) 155, 398, 701
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 4 cut(s) 65, 541, 571, 701
Kzo9I GATC 4 cut(s) 139, 361, 561, 649
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 2 cut(s) 83, 628
LweI GCATC 1 cut(s) 495
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 64, 280
MalI GATC 4 cut(s) 141, 363, 563, 651
MboI GATC 4 cut(s) 139, 361, 561, 649
MflI RGATCY 3 cut(s) 139, 361, 649
MhlI GDGCHC 2 cut(s) 34, 124
MluCI AATT 5 cut(s) 17, 103, 433, 585, 629
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 9 cut(s) 21, 60, 169, 321, 340, 349, 352, 441, 657
Mph1103I ATGCAT 1 cut(s) 703
MseI TTAA 2 cut(s) 312, 510
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 606
NdeII GATC 4 cut(s) 139, 361, 561, 649
NlaIII CATG 4 cut(s) 65, 541, 571, 701
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 454
PkrI GCNGC 3 cut(s) 98, 618, 621
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 32
PspOMI GGGCCC 1 cut(s) 30
PspPI GGNCC 3 cut(s) 30, 31, 73
PspPPI RGGWCCY 1 cut(s) 73
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 3 cut(s) 139, 361, 649
PsyI GACNNNGTC 1 cut(s) 454
RsaI GTAC 2 cut(s) 535, 592
RsaNI GTAC 2 cut(s) 534, 591
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 312, 510
SatI GCNGC 3 cut(s) 97, 617, 620
Sau3AI GATC 4 cut(s) 139, 361, 561, 649
Sau96I GGNCC 3 cut(s) 30, 31, 73
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 2 cut(s) 34, 124
SetI ASST 8 cut(s) 8, 78, 94, 98, 135, 222, 252, 668
SfaNI GCATC 1 cut(s) 495
SinI GGWCC 1 cut(s) 73
Sse9I AATT 5 cut(s) 17, 103, 433, 585, 629
SsiI CCGC 1 cut(s) 619
SspI AATATT 1 cut(s) 503
SspMI CTAG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 69, 76
TaaI ACNGT 2 cut(s) 402, 549
TaqI TCGA 1 cut(s) 366
TasI AATT 5 cut(s) 17, 103, 433, 585, 629
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 622
Tru1I TTAA 2 cut(s) 312, 510
Tru9I TTAA 2 cut(s) 312, 510
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 96, 616
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 366, 571
Tth111I GACNNNGTC 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.