RLG00000022693

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000695
Physical Location & Seq
Forward (+)
9878838 .. 9880866
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022693

Sequence Viewer

Length: 546 bp
ATGGGAGAGCCCTTCCCATTGAGTAGCCTCCGGCGGGCCATGTTACCAAGGACCTTGGTTTTGGACAAGCGTTTGGAGTTAGAGGATGACGTTCAGGAGAAAGTACAAGAAGAAAATGTTGTAAAGCTGCCGGTGGAAGAAGCAGTGGCTATAGAGGTTGAAGAAAAGGCTATTCAGTTGGTGGAAGTCACACAACAGAAACAACGGTTGAAATGCTTGTGGTTGTGGGCTAGAGACAATTTGGCAAATGGGAGGACAATGTCCTTTCAGATGGAAGATAAAGTTTTTGGCATCAACAGGAAGCAATATTTGTTTAAGGGAGACATTTATGCATTGCGTACCATGTCTGAACTGTCTGGTGGAGTGATCTCCATGTATATTCTTGGAATCAAAATTTACAATGCTCAAAGGGATAGATGTGGCCAGAAATCAATAGTGTGGCATAACATGGGGTGGCAGCGGCGATCGGAATTGGTTTACACCCAAAAGGATCTTGATGATGTGAGGTCAGAGTGGGCAAAGTTTATCTTGAAGTATCATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

21.27

Weight (kDa)

8.47

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 34, 460
AclWI GGATC 1 cut(s) 498
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 393
AfaI GTAC 2 cut(s) 105, 340
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 161, 211, 532
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 228, 315
AlwI GGATC 1 cut(s) 498
AoxI GGCC 2 cut(s) 36, 421
ApeKI GCWGC 2 cut(s) 127, 457
ApoI RAATTY 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspS9I GGNCC 2 cut(s) 36, 51
AvaII GGWCC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 114, 469
BccI CCATC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 228, 315
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 3 cut(s) 128, 458, 461
BlsI GCNGC 3 cut(s) 129, 459, 462
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 36, 51
BmsI GCATC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 47, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 47, 54
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 114, 469
Bsh1285I CGRYCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 38, 423
BsiEI CGRYCG 1 cut(s) 467
BsiSI CCGG 2 cut(s) 31, 131
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 228, 315
BsnI GGCC 2 cut(s) 38, 423
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 366, 464, 490
BspACI CCGC 2 cut(s) 34, 460
BspANI GGCC 2 cut(s) 38, 423
BspPI GGATC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 47, 54
BssMI GATC 3 cut(s) 366, 464, 490
BssT1I CCWWGG 2 cut(s) 47, 54
Bst4CI ACNGT 2 cut(s) 207, 354
BstC8I GCNNGC 1 cut(s) 36
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 3 cut(s) 369, 467, 493
BstMAI GTCTC 2 cut(s) 228, 315
BstMBI GATC 3 cut(s) 366, 464, 490
BstMCI CGRYCG 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 114, 469
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 2 cut(s) 38, 423
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 36, 51
Csp6I GTAC 2 cut(s) 104, 339
CviAII CATG 5 cut(s) 40, 343, 373, 448, 539
CviJI RGCY 8 cut(s) 10, 27, 38, 127, 149, 170, 230, 423
CviKI_1 RGCY 8 cut(s) 10, 27, 38, 127, 149, 170, 230, 423
CviQI GTAC 2 cut(s) 104, 339
DpnI GATC 3 cut(s) 368, 466, 492
DpnII GATC 3 cut(s) 366, 464, 490
EaeI YGGCCR 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 47, 54
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 47, 54
EcoT22I ATGCAT 2 cut(s) 334, 544
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 47, 54
FaeI CATG 5 cut(s) 43, 346, 376, 451, 542
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 5 cut(s) 39, 342, 372, 447, 538
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 128, 458, 461
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 3 cut(s) 128, 458, 461
FspBI CTAG 1 cut(s) 231
GluI GCNGC 3 cut(s) 128, 458, 461
HaeIII GGCC 2 cut(s) 38, 423
HapII CCGG 2 cut(s) 31, 131
Hin1II CATG 5 cut(s) 43, 346, 376, 451, 542
HinfI GANTC 1 cut(s) 387
HpaII CCGG 2 cut(s) 31, 131
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 4 cut(s) 270, 349, 469, 511
Hpy188III TCNNGA 3 cut(s) 95, 494, 529
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 207, 354
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 332, 542
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 5 cut(s) 43, 346, 376, 451, 542
Kzo9I GATC 3 cut(s) 366, 464, 490
LpnPI CCDG 6 cut(s) 44, 80, 144, 283, 342, 437
Lsp1109I GCAGC 2 cut(s) 114, 469
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 42, 187
MalI GATC 3 cut(s) 368, 466, 492
MboI GATC 3 cut(s) 366, 464, 490
MboII GAAGA 4 cut(s) 122, 149, 173, 287
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 3 cut(s) 238, 393, 470
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 5 cut(s) 38, 76, 148, 246, 498
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 2 cut(s) 334, 544
MscI TGGCCA 1 cut(s) 423
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 2 cut(s) 31, 131
NdeII GATC 3 cut(s) 366, 464, 490
NlaIII CATG 5 cut(s) 43, 346, 376, 451, 542
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 2 cut(s) 334, 544
PfeI GAWTC 1 cut(s) 387
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 129, 459, 462
Ple19I CGATCG 1 cut(s) 467
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
PspPI GGNCC 2 cut(s) 36, 51
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 259
PvuI CGATCG 1 cut(s) 467
RsaI GTAC 2 cut(s) 105, 340
RsaNI GTAC 2 cut(s) 104, 339
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 128, 458, 461
Sau3AI GATC 3 cut(s) 366, 464, 490
Sau96I GGNCC 2 cut(s) 36, 51
SduI GDGCHC 1 cut(s) 12
SetI ASST 5 cut(s) 56, 93, 129, 159, 509
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 51
Sse9I AATT 3 cut(s) 238, 393, 470
SsiI CCGC 2 cut(s) 34, 460
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 47, 54
TaaI ACNGT 2 cut(s) 207, 354
TaiI ACGT 1 cut(s) 93
TasI AATT 3 cut(s) 238, 393, 470
TatI WGTACW 1 cut(s) 103
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 127, 457
Tsp45I GTSAC 1 cut(s) 187
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 393
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 2 cut(s) 334, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.