Rh4CG032900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000695
Physical Location & Seq
Forward (+)
6553698 .. 6560141
6444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG032900.1

Sequence Viewer

Length: 708 bp
ATGGAAGCACCACAGGTTATCTTTGTGCCTCCGGCTCCAATGCTCAATCAGATTATGGCTCCAACAAAGACAAGGGCTGCCTCTAGAGCAAGGGCAAATATTCTGAAGGCATTGAGAATGACAAGAGCGAAGTCTGCACCAGAACCAGCAAAACTGGCTCACTCGAATGCTTCTGAAAATATGCCTTCCCCAAAGAAAGCAATCACATCGCTGAATGTCAAAAAGTCATTGACCAAGAAGAAGAAAGGCAAGTCATCAAAGGCCTCCAGCCTTGAAAAACATGGCTTACAGTTGTTGAAGAGAGGCTGTGTAACTATGCATAGGATTGTGCGTCGAAAAATCCTTGGTGTAAAGCTTAAATTCTTGTTTAATAAGAAGGGCCTTATGGTGCTACAGCGAAGGAAATGCAGTCATACATTGGGGTACTTGCACGTACCAAGGCACATATTTGGAGACCTACTTGGAAGCAGGTGCCAAGAGATCATGGCATTTGAGGAACCGCCTGCGTCAGAATCTATCCCTGAGTCAGAACTCGACGGTGCAACAATGTGGATCAAGGCATGGCAAGATAAACATGGTAACTTCAAAGATGATGAGGTAGAGCAGAATGTTGCAGAAATAAAACAACCTGTGAAGGCTGGTAAGGGTTTGAAGAATAGGAAAAGGGTAGTAGCCATAGATGAAGAGGGAGTTATTTATCGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

10.27

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 471
AciI CCGC 1 cut(s) 500
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 425, 435
AgsI TTSAA 4 cut(s) 275, 298, 586, 652
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 560
AoxI GGCC 2 cut(s) 261, 379
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 64
BcgI CGANNNNNNTGC 4 cut(s) 189, 223, 387, 421
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 459
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 4 cut(s) 36, 60, 473, 498
BpmI CTGGAG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 343, 437
Bse1I ACTGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 343, 437
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 2 cut(s) 263, 381
BshNI GGYRCC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 263, 381
Bso31I GGTCTC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 480, 552
BspACI CCGC 1 cut(s) 500
BspANI GGCC 2 cut(s) 263, 381
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 36, 60, 473, 498
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 447
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 343, 437
BssMI GATC 2 cut(s) 480, 552
BssT1I CCWWGG 2 cut(s) 343, 437
Bst4CI ACNGT 2 cut(s) 291, 539
Bst6I CTCTTC 2 cut(s) 293, 678
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 522
BstKTI GATC 2 cut(s) 483, 555
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 2 cut(s) 480, 552
BstMWI GCNNNNNNNGC 3 cut(s) 86, 134, 155
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 263, 381
BtgZI GCGATG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 2 cut(s) 320, 495
Csp6I GTAC 2 cut(s) 424, 434
CviAII CATG 4 cut(s) 281, 484, 561, 575
CviQI GTAC 2 cut(s) 424, 434
DdeI CTNAG 1 cut(s) 522
DpnI GATC 2 cut(s) 482, 554
DpnII GATC 2 cut(s) 480, 552
Eam1104I CTCTTC 2 cut(s) 293, 678
EarI CTCTTC 2 cut(s) 293, 678
Eco130I CCWWGG 2 cut(s) 343, 437
Eco147I AGGCCT 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 343, 437
EcoT22I ATGCAT 1 cut(s) 321
ErhI CCWWGG 2 cut(s) 343, 437
FaeI CATG 4 cut(s) 284, 487, 564, 578
FatI CATG 4 cut(s) 280, 483, 560, 574
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 2 cut(s) 263, 381
HapII CCGG 1 cut(s) 32
HgaI GACGC 2 cut(s) 320, 495
Hin1II CATG 4 cut(s) 284, 487, 564, 578
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 512, 524
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 5 cut(s) 51, 105, 175, 511, 529
Hpy188III TCNNGA 1 cut(s) 84
Hpy99I CGWCG 2 cut(s) 336, 539
HpyAV CCTTC 5 cut(s) 100, 195, 370, 393, 628
HpyCH4III ACNGT 2 cut(s) 291, 539
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 6 cut(s) 137, 319, 408, 430, 542, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 134, 155
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 4 cut(s) 284, 487, 564, 578
Kzo9I GATC 2 cut(s) 480, 552
LmnI GCTCC 2 cut(s) 40, 64
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 310, 578
MalI GATC 2 cut(s) 482, 554
MboI GATC 2 cut(s) 480, 552
MboII GAAGA 5 cut(s) 250, 253, 310, 664, 695
MluCI AATT 1 cut(s) 359
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 7 cut(s) 39, 91, 274, 296, 487, 589, 679
Mph1103I ATGCAT 1 cut(s) 321
MseI TTAA 3 cut(s) 357, 369, 706
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 86, 134, 155
NdeII GATC 2 cut(s) 480, 552
NlaIII CATG 4 cut(s) 284, 487, 564, 578
NlaIV GGNNCC 4 cut(s) 36, 60, 473, 498
NsiI ATGCAT 1 cut(s) 321
PaqCI CACCTGC 1 cut(s) 459
PceI AGGCCT 1 cut(s) 263
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 512
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 433
PspN4I GGNNCC 4 cut(s) 36, 60, 473, 498
PspPI GGNCC 1 cut(s) 379
RsaI GTAC 2 cut(s) 425, 435
RsaNI GTAC 2 cut(s) 424, 434
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 357, 369, 706
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 480, 552
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 533
SetI ASST 7 cut(s) 18, 357, 435, 459, 473, 600, 631
SfcI CTRYAG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 359
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 1 cut(s) 500
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 84
StuI AGGCCT 1 cut(s) 263
StyI CCWWGG 2 cut(s) 343, 437
TaaI ACNGT 2 cut(s) 291, 539
TaiI ACGT 1 cut(s) 435
TaqI TCGA 4 cut(s) 164, 334, 534, 700
TasI AATT 1 cut(s) 359
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 3 cut(s) 357, 369, 706
Tru9I TTAA 3 cut(s) 357, 369, 706
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 696
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.