RLG00000019783

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
56713136 .. 56714159
1024 bp
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UTR
Exon/CDS
Intron
RLM00000019783

Sequence Viewer

Length: 420 bp
ATGAGGTTGGAAGCAAAAGTTGAAGGGAAAACCCTTCCCATTCAGTCCCTTACAGCAGGCCAGAAGGACCTTCGTTCTGGACAAGGTAGTTGTTCCACTTTGCAGGAGAAGTGTGCATTACAAAAGATTGAGGACGCTGCTGGTATCTCTGCAAAGAAGCGATTAGACTTAGTGGATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGATGGAAGAACCAACTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAATAAGGGTTTGAAGAAGAGGAAAAGGCAAGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTATTTGGCATCGACAGGAAGCATTATCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

7.74

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 4 cut(s) 23, 275, 319, 371
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 137, 239
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 124, 226
BccI CCATC 1 cut(s) 217
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 138, 240
BlsI GCNGC 2 cut(s) 139, 241
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 180
BseGI GGATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 124, 226
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 211
BspANI GGCC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 124, 226
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 251
CviJI RGCY 2 cut(s) 60, 260
CviKI_1 RGCY 2 cut(s) 60, 260
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 67
FaeI CATG 1 cut(s) 254
FaiI YATR 1 cut(s) 252
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 138, 240
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 138, 240
GluI GCNGC 2 cut(s) 138, 240
HaeIII GGCC 1 cut(s) 60
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 78, 251
HpyAV CCTTC 7 cut(s) 17, 44, 58, 80, 181, 250, 377
HpyCH4V TGCA 4 cut(s) 103, 116, 152, 242
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 1 cut(s) 254
LpnPI CCDG 7 cut(s) 42, 63, 74, 89, 126, 200, 386
Lsp1109I GCAGC 2 cut(s) 124, 226
LweI GCATC 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 5 cut(s) 209, 212, 239, 331, 334
MluCI AATT 2 cut(s) 341, 371
MnlI CCTC 3 cut(s) 124, 318, 349
MseI TTAA 1 cut(s) 418
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 219
PagI TCATGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 139, 241
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 244
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 2 cut(s) 138, 240
Sau96I GGNCC 1 cut(s) 67
SetI ASST 5 cut(s) 8, 72, 88, 210, 219
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 67
Sse9I AATT 2 cut(s) 341, 371
TaqI TCGA 1 cut(s) 397
TasI AATT 2 cut(s) 341, 371
TatI WGTACW 1 cut(s) 211
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TseI GCWGC 2 cut(s) 137, 239
TspDTI ATGAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.