Rh5CG355300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
41514143 .. 41535481
21339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG355300.1

Sequence Viewer

Length: 555 bp
ATGCAGGCTGAGATTGTTTTATTTCCATTAATAGTGATGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAAGGCAAGTAGGCATTCTTGAAGAGGAGAATATTGACATGAAAAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCAAGGGACAATTTGGCAAATGCGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATTTGTTTAAGTCAGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGAGTAATCTCAATGTATATATGTGGGATCAAAATTTACAATGCTCAAAGAAATAGGTCTGGCCGGAAATCAATAGTGTGGCAAAACATGAGGGCAATATCCCAAAGTCGCATATCCCAAACACAAAAATATAAGCATGCTGTAATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.11

Weight (kDa)

9.49

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 1 cut(s) 435
AfaI GTAC 2 cut(s) 63, 382
AgsI TTSAA 5 cut(s) 125, 169, 200, 253, 310
AluBI AGCT 3 cut(s) 86, 226, 552
AluI AGCT 3 cut(s) 86, 226, 552
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 86, 89
ApoI RAATTY 1 cut(s) 435
AseI ATTAAT 1 cut(s) 29
BbvI GCAGC 2 cut(s) 73, 76
BccI CCATC 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 87, 90
BlsI GCNGC 2 cut(s) 88, 91
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 73, 76
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 71, 466
BslFI GGGAC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 1 cut(s) 465
Bsp1407I TGTACA 2 cut(s) 61, 380
Bsp143I GATC 1 cut(s) 429
BspANI GGCC 1 cut(s) 465
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 437
BsrGI TGTACA 2 cut(s) 61, 380
BsrI ACTGG 1 cut(s) 156
BssMI GATC 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 167, 195
BstAUI TGTACA 2 cut(s) 61, 380
BstC8I GCNNGC 2 cut(s) 6, 540
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 1 cut(s) 432
BstMBI GATC 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 73, 76
BsuRI GGCC 1 cut(s) 465
Cac8I GCNNGC 2 cut(s) 6, 540
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 100
Csp6I GTAC 2 cut(s) 62, 381
CviAII CATG 5 cut(s) 101, 217, 371, 490, 539
CviJI RGCY 6 cut(s) 8, 86, 110, 226, 465, 552
CviKI_1 RGCY 6 cut(s) 8, 86, 110, 226, 465, 552
CviQI GTAC 2 cut(s) 62, 381
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 167, 195
EarI CTCTTC 2 cut(s) 167, 195
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 5 cut(s) 104, 220, 374, 493, 542
FaqI GGGAC 1 cut(s) 290
FatI CATG 5 cut(s) 100, 216, 370, 489, 538
Fnu4HI GCNGC 2 cut(s) 87, 90
Fsp4HI GCNGC 2 cut(s) 87, 90
GluI GCNGC 2 cut(s) 87, 90
HaeIII GGCC 1 cut(s) 465
HapII CCGG 2 cut(s) 71, 466
Hin1II CATG 5 cut(s) 104, 220, 374, 493, 542
HpaII CCGG 2 cut(s) 71, 466
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 101, 197
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 100, 316
HpyCH4V TGCA 4 cut(s) 4, 92, 245, 374
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 5 cut(s) 104, 220, 374, 493, 542
Kzo9I GATC 1 cut(s) 429
LpnPI CCDG 9 cut(s) 50, 84, 96, 169, 255, 325, 384, 447, 479
Lsp1109I GCAGC 2 cut(s) 73, 76
LweI GCATC 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 6 cut(s) 59, 62, 89, 181, 184, 212
MluCI AATT 3 cut(s) 280, 310, 435
MnlI CCTC 4 cut(s) 168, 196, 288, 486
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 29, 357
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 71, 466
Mva1269I GAATGC 1 cut(s) 192
NdeII GATC 1 cut(s) 429
NlaIII CATG 5 cut(s) 104, 220, 374, 493, 542
NlaIV GGNNCC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PagI TCATGA 1 cut(s) 100
PctI GAATGC 1 cut(s) 192
PkrI GCNGC 2 cut(s) 88, 91
PshBI ATTAAT 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 63, 382
RsaNI GTAC 2 cut(s) 62, 381
SaqAI TTAA 2 cut(s) 29, 357
SatI GCNGC 2 cut(s) 87, 90
Sau3AI GATC 1 cut(s) 429
SetI ASST 8 cut(s) 60, 69, 88, 228, 250, 403, 461, 554
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 542
Sse9I AATT 3 cut(s) 280, 310, 435
SspI AATATT 1 cut(s) 211
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 280, 310, 435
TatI WGTACW 2 cut(s) 61, 380
Tru1I TTAA 2 cut(s) 29, 357
Tru9I TTAA 2 cut(s) 29, 357
TseI GCWGC 2 cut(s) 86, 89
TspDTI ATGAA 3 cut(s) 89, 233, 359
VspI ATTAAT 1 cut(s) 29
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.