Rroxscaffold_2G00114500

Electron transfer flavoprotein-ubiquinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000695
Physical Location & Seq
Forward (+)
40551844 .. 40559763
7920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114500.1

Sequence Viewer

Length: 324 bp
ATGAAAGGGAGAGCTGCCTTAACGCCGAAGCATGGAAAACCCGATAATGAAGCAACAAATATTGCAGAGTTCCACCACTTTAGTTTCAAAGAGTTCAATCAGTTCTATTCTTCATGGATAACCAGCTCAAACGTTTGCGGATCTGAAAAGCAAAGGTTGTCAATTTCTGGGTATGGATTGATTGAGGACGCTGCTGGTATCTCTGCAAAGAAGCGGTTACACTTAGTGGATGACATTGCGAAGGAAGTGGAAGAAGATAAGGTTGTACGAGTTCCGATGGAAGAACCAGCCTGCTGTTCCGTGGAAGAACCAATTGCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004174 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009063 GO:0009081 GO:0009083 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009987 GO:0015980 GO:0016020 GO:0016021 GO:0016042 GO:0016054 GO:0016491 GO:0016645 GO:0016649 GO:0016722 GO:0017133 GO:0019395 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0030258 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032592 GO:0032787 GO:0032991 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043783 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045251 GO:0045333 GO:0046395 GO:0048037 GO:0048038 GO:0048039 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051539 GO:0051540 GO:0055114 GO:0070013 GO:0071704 GO:0072329 GO:0097159 GO:0098573 GO:0098798 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1902494 GO:1990204
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ETF_QO FAD_binding_2 NAD_binding_8

Protein Analysis

107

Amino Acids

11.84

Weight (kDa)

5.53

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 138, 214
AclI AACGTT 1 cut(s) 132
AclWI GGATC 1 cut(s) 148
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 88, 97
AluBI AGCT 2 cut(s) 14, 126
AluI AGCT 2 cut(s) 14, 126
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 14, 191, 317
BbvI GCAGC 2 cut(s) 178, 304
BccI CCATC 1 cut(s) 271
BisI GCNGC 3 cut(s) 15, 192, 318
BlsI GCNGC 3 cut(s) 16, 193, 319
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 178, 304
BslI CCNNNNNNNGG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 2 cut(s) 138, 214
BspPI GGATC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 178, 304
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 292
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 32, 114
CviJI RGCY 3 cut(s) 14, 126, 290
CviKI_1 RGCY 3 cut(s) 14, 126, 290
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 223
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DraIII CACNNNGTG 1 cut(s) 226
FaeI CATG 2 cut(s) 35, 117
FaiI YATR 3 cut(s) 33, 115, 174
FatI CATG 2 cut(s) 31, 113
Fnu4HI GCNGC 3 cut(s) 15, 192, 318
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 15, 192, 318
GluI GCNGC 3 cut(s) 15, 192, 318
HgaI GACGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 35, 117
Hpy188I TCNGA 2 cut(s) 145, 276
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 65, 206
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 35, 117
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 136, 153, 180, 300, 304
Lsp1109I GCAGC 2 cut(s) 178, 304
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 216
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 5 cut(s) 102, 263, 266, 293, 317
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 140
MluCI AATT 2 cut(s) 162, 312
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 20
MunI CAATTG 1 cut(s) 312
NdeII GATC 1 cut(s) 140
NlaIII CATG 2 cut(s) 35, 117
PkrI GCNGC 3 cut(s) 16, 193, 319
Psp1406I AACGTT 1 cut(s) 132
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 15, 192, 318
Sau3AI GATC 1 cut(s) 140
SetI ASST 5 cut(s) 16, 128, 135, 158, 264
Sse9I AATT 2 cut(s) 162, 312
SsiI CCGC 2 cut(s) 138, 214
SspI AATATT 1 cut(s) 61
TaiI ACGT 1 cut(s) 135
TasI AATT 2 cut(s) 162, 312
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 3 cut(s) 14, 191, 317
TspDTI ATGAA 3 cut(s) 17, 63, 102
TspGWI ACGGA 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.