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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 60 |
| AclWI | GGATC | 1 cut(s) | 266 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AgsI | TTSAA | 5 cut(s) | 122, 185, 316, 400, 457 |
| AluBI | AGCT | 2 cut(s) | 281, 373 |
| AluI | AGCT | 2 cut(s) | 281, 373 |
| AlwI | GGATC | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 105 |
| BceAI | ACGGC | 1 cut(s) | 92 |
| BfmI | CTRYAG | 1 cut(s) | 87 |
| BmiI | GGNNCC | 1 cut(s) | 44 |
| BmsI | GCATC | 1 cut(s) | 489 |
| BpuEI | CTTGAG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 68 |
| BsaWI | WCCGGW | 1 cut(s) | 207 |
| Bse1I | ACTGG | 1 cut(s) | 303 |
| Bse3DI | GCAATG | 1 cut(s) | 5 |
| BseDI | CCNNGG | 2 cut(s) | 46, 68 |
| BseMI | GCAATG | 1 cut(s) | 5 |
| BseNI | ACTGG | 1 cut(s) | 303 |
| BseRI | GAGGAG | 1 cut(s) | 365 |
| BsgI | GTGCAG | 1 cut(s) | 375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 153 |
| BshFI | GGCC | 1 cut(s) | 107 |
| BsiEI | CGRYCG | 1 cut(s) | 153 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslFI | GGGAC | 2 cut(s) | 327, 437 |
| BsmFI | GGGAC | 2 cut(s) | 327, 437 |
| BsnI | GGCC | 1 cut(s) | 107 |
| Bsp1407I | TGTACA | 1 cut(s) | 36 |
| Bsp143I | GATC | 2 cut(s) | 150, 271 |
| BspACI | CCGC | 1 cut(s) | 60 |
| BspANI | GGCC | 1 cut(s) | 107 |
| BspHI | TCATGA | 1 cut(s) | 97 |
| BspLI | GGNNCC | 1 cut(s) | 44 |
| BspMAI | CTGCAG | 1 cut(s) | 91 |
| BspPI | GGATC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 1 cut(s) | 5 |
| BsrGI | TGTACA | 1 cut(s) | 36 |
| BsrI | ACTGG | 1 cut(s) | 303 |
| BssECI | CCNNGG | 2 cut(s) | 46, 68 |
| BssMI | GATC | 2 cut(s) | 150, 271 |
| Bst4CI | ACNGT | 1 cut(s) | 194 |
| Bst6I | CTCTTC | 2 cut(s) | 314, 342 |
| BstAUI | TGTACA | 1 cut(s) | 36 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstDSI | CCRYGG | 2 cut(s) | 46, 68 |
| BstKTI | GATC | 2 cut(s) | 153, 274 |
| BstMBI | GATC | 2 cut(s) | 150, 271 |
| BstMCI | CGRYCG | 1 cut(s) | 153 |
| BstSFI | CTRYAG | 1 cut(s) | 87 |
| BsuRI | GGCC | 1 cut(s) | 107 |
| BtgI | CCRYGG | 2 cut(s) | 46, 68 |
| CciI | TCATGA | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 251 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 3 cut(s) | 98, 218, 364 |
| CviJI | RGCY | 6 cut(s) | 82, 107, 140, 281, 312, 373 |
| CviKI_1 | RGCY | 6 cut(s) | 82, 107, 140, 281, 312, 373 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 2 cut(s) | 152, 273 |
| DpnII | GATC | 2 cut(s) | 150, 271 |
| Eam1104I | CTCTTC | 2 cut(s) | 314, 342 |
| EarI | CTCTTC | 2 cut(s) | 314, 342 |
| FaeI | CATG | 3 cut(s) | 101, 221, 367 |
| FaiI | YATR | 3 cut(s) | 99, 219, 365 |
| FaqI | GGGAC | 2 cut(s) | 327, 437 |
| FatI | CATG | 3 cut(s) | 97, 217, 363 |
| HaeIII | GGCC | 1 cut(s) | 107 |
| HapII | CCGG | 1 cut(s) | 208 |
| HgaI | GACGC | 1 cut(s) | 251 |
| Hin1II | CATG | 3 cut(s) | 101, 221, 367 |
| HinfI | GANTC | 1 cut(s) | 256 |
| HpaII | CCGG | 1 cut(s) | 208 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 266 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 344 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 266 |
| Hpy99I | CGWCG | 2 cut(s) | 135, 488 |
| HpyAV | CCTTC | 4 cut(s) | 6, 97, 230, 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 173, 331, 392 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| Hsp92II | CATG | 3 cut(s) | 101, 221, 367 |
| Kzo9I | GATC | 2 cut(s) | 150, 271 |
| LpnPI | CCDG | 5 cut(s) | 25, 92, 221, 316, 402 |
| LweI | GCATC | 1 cut(s) | 489 |
| MaeIII | GTNAC | 1 cut(s) | 124 |
| MalI | GATC | 2 cut(s) | 152, 273 |
| MboI | GATC | 2 cut(s) | 150, 271 |
| MboII | GAAGA | 9 cut(s) | 34, 37, 63, 85, 245, 328, 331, 359, 379 |
| MluCI | AATT | 4 cut(s) | 196, 332, 427, 457 |
| MnlI | CCTC | 4 cut(s) | 285, 315, 343, 435 |
| MseI | TTAA | 2 cut(s) | 360, 505 |
| MspA1I | CMGCKG | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 208 |
| NdeII | GATC | 2 cut(s) | 150, 271 |
| NlaIII | CATG | 3 cut(s) | 101, 221, 367 |
| NlaIV | GGNNCC | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 97 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| Ple19I | CGATCG | 1 cut(s) | 153 |
| PspN4I | GGNNCC | 1 cut(s) | 44 |
| PstI | CTGCAG | 1 cut(s) | 91 |
| PvuI | CGATCG | 1 cut(s) | 153 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SaqAI | TTAA | 2 cut(s) | 360, 505 |
| Sau3AI | GATC | 2 cut(s) | 150, 271 |
| SetI | ASST | 5 cut(s) | 35, 44, 283, 375, 397 |
| SfaNI | GCATC | 1 cut(s) | 489 |
| SfcI | CTRYAG | 1 cut(s) | 87 |
| SmlI | CTYRAG | 1 cut(s) | 276 |
| SmoI | CTYRAG | 1 cut(s) | 276 |
| Sse9I | AATT | 4 cut(s) | 196, 332, 427, 457 |
| SsiI | CCGC | 1 cut(s) | 60 |
| SspI | AATATT | 2 cut(s) | 160, 358 |
| TaaI | ACNGT | 1 cut(s) | 194 |
| TaqI | TCGA | 4 cut(s) | 149, 153, 254, 483 |
| TasI | AATT | 4 cut(s) | 196, 332, 427, 457 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 2 cut(s) | 360, 505 |
| Tru9I | TTAA | 2 cut(s) | 360, 505 |
| TspDTI | ATGAA | 3 cut(s) | 86, 206, 380 |
| TspGWI | ACGGA | 2 cut(s) | 35, 57 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 184 |