Rh1BG098400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000695
Physical Location & Seq
Reverse (-)
17296997 .. 17312890
15894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG098400.1

Sequence Viewer

Length: 990 bp
ATGGTGGATTTTGGGGGATTGCGGTGGGATTCATGGGAGCCTGGTGGCGGTTTGGTGGTCTGGGGTGGAGAGTTGTTCATGGGTGGGAGCGGGTCTCCGTCCAGCAAGGGTGGAATTGCAGAGGTGAGCTCAAGTTGGGGGAGGCTCCATGCGGTGGTTTTGCTTTTGAGGGCCTATCGCGGTTTGGATTTGATCATGGCTCCTTCGAAGACAAGGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACAAGAGCGAGTTCTGCACCAGAACTAGCATCTTCTGGTCAATCAAATGCATCAGAAAATAAGCCATCACCAAAGAGAGCAACGACATCGTGTGCATTACAAAACAGTGAGGACGCTGCCATTATCTCTGCAAAGAAGCGGTTAGAGTTAGTGGATGACATTGTAAAGGAAGTGGAAGAAGATAAGGTTATACAGGTTCCGGTGGAAGAACCAGCTGCTGCAGTAGTTCATGAGAAGGCTGTTGAGTTGGTTGAAGTTACACAGCAGAAACAGCCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAAGGCAAGTAGACAGTCCTGAAGAAGAGTATATTGACATGAAGAAGCTACCAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCAAGAGACAATTTGGCAAATGGGCGGACAATCTCCTTCAATTTGGAAGAGAAAGTGTTTGGCATCGATAGGAAGCAATATCTGTTTAAGTCAGACATTCATGCAATGTGTACGATGACTGAACTATCAGGTGGAGTAATCTGCATGTATATGTGCTCCGTTGCAGGGAAACTTCCATATCCAGAAGAGTCGCTGCTCTGCTTGTGCATACCCAGCTGTCCGCACCAGGAAATGTATGAAACCCTTCTCTCTCTGCTTTTGGTTCATGATTTTGTTCTTGTATATGGAATTTTGGTTGAGAAATTTGAGTACCCAGAAAAGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

329

Amino Acids

36.42

Weight (kDa)

6.28

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 180
AciI CCGC 8 cut(s) 22, 48, 90, 152, 180, 400, 685, 881
AcsI RAATTY 2 cut(s) 948, 962
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 2 cut(s) 772, 971
AfiI CCNNNNNNNGG 4 cut(s) 47, 154, 825, 979
AgsI TTSAA 5 cut(s) 256, 515, 559, 643, 700
AjnI CCWGG 2 cut(s) 40, 885
AluBI AGCT 4 cut(s) 129, 476, 616, 876
AluI AGCT 4 cut(s) 129, 476, 616, 876
Alw21I GWGCWC 2 cut(s) 131, 818
Alw26I GTCTC 2 cut(s) 99, 660
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 5 cut(s) 218, 377, 476, 479, 853
ApoI RAATTY 2 cut(s) 948, 962
Asp700I GAANNNNTTC 1 cut(s) 903
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 136, 321
AsuII TTCGAA 1 cut(s) 206
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 131, 818
BbvI GCAGC 5 cut(s) 205, 364, 463, 466, 840
BccI CCATC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 2 cut(s) 42, 887
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 99, 660
BfaI CTAG 2 cut(s) 225, 287
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 5 cut(s) 219, 378, 477, 480, 854
BlsI GCNGC 5 cut(s) 220, 379, 478, 481, 855
Bme1390I CCNGG 2 cut(s) 42, 887
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 4 cut(s) 39, 146, 201, 459
BmrFI CCNGG 2 cut(s) 42, 887
BmsI GCATC 3 cut(s) 299, 320, 732
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 4 cut(s) 79, 111, 113, 145
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 726
BsaI GGTCTC 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 154, 825, 979
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 42, 887
BseCI ATCGAT 1 cut(s) 726
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 4 cut(s) 47, 154, 825, 979
BseMI GCAATG 1 cut(s) 771
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 5 cut(s) 205, 364, 463, 466, 840
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 261, 618
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 726
BsiHKAI GWGCWC 2 cut(s) 131, 818
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 4 cut(s) 47, 154, 825, 979
BsmAI GTCTC 2 cut(s) 99, 660
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 131, 818
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 8 cut(s) 22, 48, 90, 152, 180, 400, 685, 881
BspANI GGCC 1 cut(s) 173
BspDI ATCGAT 1 cut(s) 726
BspFNI CGCG 1 cut(s) 180
BspHI TCATGA 2 cut(s) 490, 925
BspLI GGNNCC 4 cut(s) 39, 146, 201, 459
BspMAI CTGCAG 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 1 cut(s) 546
BssMI GATC 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 42, 887
Bst4CI ACNGT 2 cut(s) 368, 584
Bst6I CTCTTC 4 cut(s) 557, 588, 702, 840
BstBI TTCGAA 1 cut(s) 206
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 2 cut(s) 99, 660
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 4 cut(s) 227, 275, 532, 873
BstNI CCWGG 2 cut(s) 42, 887
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 2 cut(s) 40, 885
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 5 cut(s) 205, 364, 463, 466, 840
BstV2I GAAGAC 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 726
BsuRI GGCC 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 726
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 479
CciI TCATGA 2 cut(s) 490, 925
Cfr13I GGNCC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 771, 970
CviAII CATG 9 cut(s) 33, 79, 149, 196, 491, 607, 761, 805, 926
CviQI GTAC 2 cut(s) 771, 970
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eam1104I CTCTTC 4 cut(s) 557, 588, 702, 840
EarI CTCTTC 4 cut(s) 557, 588, 702, 840
EciI GGCGGA 1 cut(s) 700
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 40, 885
EcoT22I ATGCAT 2 cut(s) 253, 313
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 9 cut(s) 36, 82, 152, 199, 494, 610, 764, 808, 929
FatI CATG 9 cut(s) 32, 78, 148, 195, 490, 606, 760, 804, 925
FauI CCCGC 1 cut(s) 83
FbaI TGATCA 1 cut(s) 192
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 219, 378, 477, 480, 854
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 219, 378, 477, 480, 854
FspBI CTAG 2 cut(s) 225, 287
GluI GCNGC 5 cut(s) 219, 378, 477, 480, 854
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 461
HgaI GACGC 1 cut(s) 383
Hin1II CATG 9 cut(s) 36, 82, 152, 199, 494, 610, 764, 808, 929
HinfI GANTC 2 cut(s) 29, 848
HpaII CCGG 1 cut(s) 461
HphI GGTGA 2 cut(s) 136, 321
Hpy166II GTNNAC 2 cut(s) 580, 771
Hpy188I TCNGA 2 cut(s) 316, 754
Hpy188III TCNNGA 4 cut(s) 491, 587, 842, 926
Hpy8I GTNNAC 2 cut(s) 580, 771
HpyAV CCTTC 4 cut(s) 213, 490, 706, 914
HpyCH4III ACNGT 2 cut(s) 368, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 275, 532, 873
Hsp92II CATG 9 cut(s) 36, 82, 152, 199, 494, 610, 764, 808, 929
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 5 cut(s) 37, 87, 150, 205, 821
Lsp1109I GCAGC 5 cut(s) 205, 364, 463, 466, 840
LweI GCATC 3 cut(s) 299, 320, 732
MaeI CTAG 2 cut(s) 225, 287
MaeIII GTNAC 2 cut(s) 259, 517
MalI GATC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 90
MboI GATC 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 131, 818
MluCI AATT 5 cut(s) 114, 670, 700, 948, 962
MlyI GAGTC 1 cut(s) 857
MnlI CCTC 5 cut(s) 115, 135, 162, 364, 558
Mph1103I ATGCAT 2 cut(s) 253, 313
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 476, 876
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 2 cut(s) 42, 887
MvaI CCWGG 2 cut(s) 42, 887
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 4 cut(s) 227, 275, 532, 873
NdeII GATC 1 cut(s) 192
NlaIII CATG 9 cut(s) 36, 82, 152, 199, 494, 610, 764, 808, 929
NlaIV GGNNCC 4 cut(s) 39, 146, 201, 459
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 2 cut(s) 253, 313
NspI RCATGY 1 cut(s) 808
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 2 cut(s) 490, 925
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 5 cut(s) 220, 379, 478, 481, 855
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
Psp124BI GAGCTC 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 40, 885
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 40, 885
PspN4I GGNNCC 4 cut(s) 39, 146, 201, 459
PspPI GGNCC 1 cut(s) 171
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 479
PvuII CAGCTG 2 cut(s) 476, 876
RsaI GTAC 2 cut(s) 772, 971
RsaNI GTAC 2 cut(s) 771, 970
RseI CAYNNNNRTG 1 cut(s) 809
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 5 cut(s) 219, 378, 477, 480, 854
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 2 cut(s) 42, 887
SduI GDGCHC 2 cut(s) 131, 818
SetI ASST 9 cut(s) 126, 131, 450, 459, 478, 618, 640, 793, 878
SfaNI GCATC 3 cut(s) 299, 320, 732
SfcI CTRYAG 1 cut(s) 480
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 5 cut(s) 114, 670, 700, 948, 962
SsiI CCGC 8 cut(s) 22, 48, 90, 152, 180, 400, 685, 881
SspI AATATT 1 cut(s) 241
SspMI CTAG 2 cut(s) 225, 287
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 40, 885
TaaI ACNGT 2 cut(s) 368, 584
TaqI TCGA 2 cut(s) 206, 726
TasI AATT 5 cut(s) 114, 670, 700, 948, 962
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 5 cut(s) 218, 377, 476, 479, 853
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 7 cut(s) 21, 67, 479, 623, 749, 912, 914
TspGWI ACGGA 2 cut(s) 87, 808
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 154
XapI RAATTY 2 cut(s) 948, 962
XceI RCATGY 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 2 cut(s) 225, 287
Zsp2I ATGCAT 2 cut(s) 253, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.