Rh2CG327400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
42564942 .. 42575421
10480 bp
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UTR
Exon/CDS
Intron
Rh2CG327400.1

Sequence Viewer

Length: 489 bp
ATGAAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAACAGGCAAGTAGGCATTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACCAAAATATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAAGAAGCATTATATGTTTAAGTCAGACATTCATGCATTGTGTACAATGACTGAACTATCAGGTGGAGTAATCTCAATGTATATATGTTTCGCCCTTGGAGACATCGTACCTGAAAGATCATGCTACCATGTTCTTTTATCTTTGAAATCAAGTGACCCACAAGGAAGTGGTGCGTTAAGCAATCGTGTCGGGCCGCCTAACAAATCCATATCGACGTTGGCTTTGTCAAAGACCACCAATACTGAAGTCAGTCTAGCTGATCGAGTCCATCCTCAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.12

Weight (kDa)

9.56

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 401
AcuI CTGAAG 2 cut(s) 87, 471
AfaI GTAC 2 cut(s) 250, 315
AgsI TTSAA 4 cut(s) 37, 121, 178, 352
AluBI AGCT 2 cut(s) 94, 464
AluI AGCT 2 cut(s) 94, 464
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AspS9I GGNCC 1 cut(s) 398
BccI CCATC 1 cut(s) 483
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 461
BglII AGATCT 1 cut(s) 483
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 400
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 3 cut(s) 323, 466, 483
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 323, 466, 483
BssT1I CCWWGG 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 35, 63
BstAUI TGTACA 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 3 cut(s) 326, 469, 486
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 3 cut(s) 323, 466, 483
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 249, 314
CviAII CATG 4 cut(s) 85, 239, 327, 335
CviJI RGCY 4 cut(s) 94, 400, 428, 464
CviKI_1 RGCY 4 cut(s) 94, 400, 428, 464
CviQI GTAC 2 cut(s) 249, 314
DdeI CTNAG 1 cut(s) 480
DpnI GATC 3 cut(s) 325, 468, 485
DpnII GATC 3 cut(s) 323, 466, 483
Eam1104I CTCTTC 2 cut(s) 35, 63
EarI CTCTTC 2 cut(s) 35, 63
Eco130I CCWWGG 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 87, 471
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 88, 242, 330, 338
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 84, 238, 326, 334
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 1 cut(s) 461
GluI GCNGC 1 cut(s) 401
HaeIII GGCC 1 cut(s) 400
Hin1II CATG 4 cut(s) 88, 242, 330, 338
HinfI GANTC 1 cut(s) 471
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 232, 483, 488
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 2 cut(s) 113, 242
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 4 cut(s) 88, 242, 330, 338
Kzo9I GATC 3 cut(s) 323, 466, 483
LpnPI CCDG 6 cut(s) 34, 37, 78, 123, 252, 330
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 325, 468, 485
MboI GATC 3 cut(s) 323, 466, 483
MboII GAAGA 5 cut(s) 16, 49, 52, 80, 100
MflI RGATCY 1 cut(s) 483
MluCI AATT 2 cut(s) 148, 178
MlyI GAGTC 1 cut(s) 480
MnlI CCTC 4 cut(s) 36, 64, 156, 489
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 2 cut(s) 225, 383
Mva1269I GAATGC 1 cut(s) 60
NdeII GATC 3 cut(s) 323, 466, 483
NlaIII CATG 4 cut(s) 88, 242, 330, 338
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 2 cut(s) 250, 315
RsaNI GTAC 2 cut(s) 249, 314
SaqAI TTAA 2 cut(s) 225, 383
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 323, 466, 483
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 480
SetI ASST 6 cut(s) 96, 118, 271, 319, 425, 466
SfaNI GCATC 1 cut(s) 210
Sse9I AATT 2 cut(s) 148, 178
SsiI CCGC 1 cut(s) 401
SspI AATATT 2 cut(s) 79, 104
SspMI CTAG 1 cut(s) 461
StyI CCWWGG 1 cut(s) 301
TaiI ACGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 204, 419, 469
TasI AATT 2 cut(s) 148, 178
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 403
Tru1I TTAA 2 cut(s) 225, 383
Tru9I TTAA 2 cut(s) 225, 383
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 17, 101, 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.