Rmu_sc0002986.1_g000060

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
OG0000695
Physical Location & Seq
Reverse (-)
291388 .. 292353
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000060.1.cds

Sequence Viewer

Length: 702 bp
atgtgttattgcataaaacaagaacttaaagagttcgagtgcagattggctttagggtcgatcgacaatattgttgctattgctaccattgttgaagtggacactaattgtgaaaaccagacacttcatggtcttgctttggaagaagggaatgtgcgagtgtcgattctgcgtccacttgatcctcaagctaaggttccattcccagtcaacgatgagatagttactgtcaaagatgctgttggcacttacattgcttggccgagggacctcatacttcaatcccctcccgacactatgaagaaacaaccaaataagtccagtaagggtttgaagaagaggaaaaggcaagtaggcattcctgaagaggagaatattgacatgaagaagctaccaaaagattaccctgcacctttgaagtgcttgtggatttggacaagggacaatttggcaaatgggaggacaatctccttcaatttggaacagaaagtgtttggcatcgacaggaagcattatctgtttaactatttgcgtgaagtcttgaagagagaaaagatgtcacacatggttagctttgtggacccttcacagattggagcagctggaagtggaaatacaacggaaagatcgtgttttctagcaaataggttcacaactgtagagaagggccagatttttttgttgccgtataatgcagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

233

Amino Acids

26.44

Weight (kDa)

8.82

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 6 cut(s) 95, 281, 334, 418, 475, 544
AluBI AGCT 4 cut(s) 191, 391, 573, 602
AluI AGCT 4 cut(s) 191, 391, 573, 602
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 260, 667
ApeKI GCWGC 1 cut(s) 599
AspS9I GGNCC 3 cut(s) 268, 580, 667
AvaII GGWCC 2 cut(s) 268, 580
BarI GAAGNNNNNNTAC 2 cut(s) 598, 630
BbvI GCAGC 1 cut(s) 611
BceAI ACGGC 1 cut(s) 670
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme18I GGWCC 2 cut(s) 268, 580
BmgT120I GGNCC 3 cut(s) 268, 580, 667
BmiI GGNNCC 3 cut(s) 198, 269, 582
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 226, 507
BmuI ACTGGG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 206, 321
Bse3DI GCAATG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 206, 321
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 611
BsgI GTGCAG 2 cut(s) 61, 393
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 262, 669
BsiEI CGRYCG 1 cut(s) 63
BslFI GGGAC 2 cut(s) 281, 455
BsmFI GGGAC 2 cut(s) 281, 455
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 2 cut(s) 262, 669
Bsp143I GATC 3 cut(s) 60, 181, 626
BspANI GGCC 2 cut(s) 262, 669
BspLI GGNNCC 3 cut(s) 198, 269, 582
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 206, 321
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 60, 181, 626
Bst4CI ACNGT 2 cut(s) 229, 658
Bst6I CTCTTC 3 cut(s) 332, 360, 539
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 3 cut(s) 63, 184, 629
BstMBI GATC 3 cut(s) 60, 181, 626
BstMCI CGRYCG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 262, 669
Cfr13I GGNCC 3 cut(s) 268, 580, 667
CseI GACGC 1 cut(s) 161
CviAII CATG 3 cut(s) 128, 382, 565
CviJI RGCY 7 cut(s) 50, 191, 262, 391, 573, 602, 669
CviKI_1 RGCY 7 cut(s) 50, 191, 262, 391, 573, 602, 669
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 62, 183, 628
DpnII GATC 3 cut(s) 60, 181, 626
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 3 cut(s) 332, 360, 539
EarI CTCTTC 3 cut(s) 332, 360, 539
Eco47I GGWCC 2 cut(s) 268, 580
Eco57I CTGAAG 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 268
FaeI CATG 3 cut(s) 131, 385, 568
FaiI YATR 7 cut(s) 14, 129, 275, 299, 383, 566, 690
FaqI GGGAC 2 cut(s) 281, 455
FatI CATG 3 cut(s) 127, 381, 564
Fnu4HI GCNGC 1 cut(s) 600
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 1 cut(s) 638
GluI GCNGC 1 cut(s) 600
HaeIII GGCC 2 cut(s) 262, 669
HgaI GACGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 131, 385, 568
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 166
Hpy166II GTNNAC 5 cut(s) 100, 176, 211, 580, 651
Hpy188III TCNNGA 3 cut(s) 290, 362, 541
Hpy8I GTNNAC 5 cut(s) 100, 176, 211, 580, 651
HpyAV CCTTC 4 cut(s) 140, 481, 594, 658
HpyCH4III ACNGT 2 cut(s) 229, 658
HpyCH4V TGCA 4 cut(s) 12, 42, 410, 695
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 3 cut(s) 131, 385, 568
Kzo9I GATC 3 cut(s) 60, 181, 626
LmnI GCTCC 1 cut(s) 596
LpnPI CCDG 9 cut(s) 131, 219, 334, 375, 420, 490, 588, 681, 683
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 2 cut(s) 226, 507
MaeI CTAG 1 cut(s) 638
MaeIII GTNAC 2 cut(s) 223, 558
MalI GATC 3 cut(s) 62, 183, 628
MboI GATC 3 cut(s) 60, 181, 626
MboII GAAGA 7 cut(s) 155, 313, 346, 349, 377, 397, 556
MluCI AATT 3 cut(s) 106, 445, 475
MnlI CCTC 7 cut(s) 195, 258, 281, 297, 333, 361, 453
MseI TTAA 2 cut(s) 27, 522
MspA1I CMGCKG 1 cut(s) 602
Mva1269I GAATGC 1 cut(s) 357
NdeII GATC 3 cut(s) 60, 181, 626
NlaIII CATG 3 cut(s) 131, 385, 568
NlaIV GGNNCC 3 cut(s) 198, 269, 582
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PctI GAATGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 601
Ple19I CGATCG 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 198, 269, 582
PspPI GGNCC 3 cut(s) 268, 580, 667
PspPPI RGGWCCY 1 cut(s) 268
PvuI CGATCG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 602
SaqAI TTAA 2 cut(s) 27, 522
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 3 cut(s) 60, 181, 626
Sau96I GGNCC 3 cut(s) 268, 580, 667
SetI ASST 8 cut(s) 193, 198, 273, 393, 415, 575, 604, 650
SfaNI GCATC 2 cut(s) 226, 507
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 2 cut(s) 268, 580
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 3 cut(s) 106, 445, 475
SspI AATATT 2 cut(s) 70, 376
SspMI CTAG 1 cut(s) 638
TaaI ACNGT 2 cut(s) 229, 658
TaqI TCGA 5 cut(s) 36, 59, 63, 164, 501
TasI AATT 3 cut(s) 106, 445, 475
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 27, 522
Tru9I TTAA 2 cut(s) 27, 522
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 116, 314, 398
TspGWI ACGGA 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 268, 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 94, 125
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.