RLG00000006283

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
5933432 .. 5935285
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006283

Sequence Viewer

Length: 462 bp
ATGGCTCCTTCAAAGACAAAGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACACTAGCGAGGTCTACACCAGAACCAGCAACTTCTAAGGAGGAGGCAGAGAAAATTGTGGCACGGGAGAGAGCATATTGGGCTGAAACTATAAGGAGGTTGGAAGCAAAAGTTGATGGGAAAACCCTTCCCAATGAGTCCCCTCCGGTAGGCCAGAAGGACCTTGGTTCTGGACAAGGTAGTTGCTCCAATTTACGGGAGAAGTGTGCATTACAACAGATTGAGGAAGCTGCTGTTATCTCTGCAAAGAAGCGGTTAGAGTTAGTGGGTGACATTGCGGAGGAAGTGGAAGAAGATAAGGTTGTACAGGTTCCGGTGGAAGAACCAGCTGCTGCAATAGTTCATGAGAAGGCTGTGAGGTCGGTTGAAGTTACACAGCACGTATATATGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.72

Weight (kDa)

6.2

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AciI CCGC 2 cut(s) 319, 344
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 215, 261
AgsI TTSAA 3 cut(s) 12, 61, 434
AluBI AGCT 2 cut(s) 296, 395
AluI AGCT 2 cut(s) 296, 395
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 4 cut(s) 23, 296, 395, 398
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 10, 283, 382, 385
BccI CCATC 1 cut(s) 176
BfaI CTAG 3 cut(s) 30, 71, 460
BisI GCNGC 4 cut(s) 24, 297, 396, 399
BlsI GCNGC 4 cut(s) 25, 298, 397, 400
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 6, 378
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 211, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 261
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 215, 261
BseMI GCAATG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 4 cut(s) 10, 283, 382, 385
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 212, 380
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 215, 261
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 370
BspACI CCGC 2 cut(s) 319, 344
BspANI GGCC 1 cut(s) 219
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 6, 378
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 229
BstAUI TGTACA 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 32, 146
BstV1I GCAGC 4 cut(s) 10, 283, 382, 385
BsuRI GGCC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 371
CviAII CATG 1 cut(s) 410
CviJI RGCY 7 cut(s) 5, 23, 149, 219, 296, 395, 419
CviKI_1 RGCY 7 cut(s) 5, 23, 149, 219, 296, 395, 419
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 413
FaiI YATR 6 cut(s) 142, 158, 411, 451, 453, 455
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 409
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 4 cut(s) 24, 297, 396, 399
Fsp4HI GCNGC 4 cut(s) 24, 297, 396, 399
FspBI CTAG 3 cut(s) 30, 71, 460
GluI GCNGC 4 cut(s) 24, 297, 396, 399
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 212, 380
Hin1II CATG 1 cut(s) 413
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 212, 380
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 237, 410
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 4 cut(s) 18, 203, 217, 409
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 4 cut(s) 56, 275, 311, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 146
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 1 cut(s) 413
LmnI GCTCC 2 cut(s) 10, 257
LpnPI CCDG 8 cut(s) 99, 105, 222, 225, 233, 359, 393, 405
Lsp1109I GCAGC 4 cut(s) 10, 283, 382, 385
MaeI CTAG 3 cut(s) 30, 71, 460
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 3 cut(s) 64, 335, 436
MboII GAAGA 3 cut(s) 368, 371, 398
MluCI AATT 2 cut(s) 120, 256
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 8 cut(s) 69, 100, 103, 156, 219, 283, 340, 417
Mph1103I ATGCAT 1 cut(s) 58
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 212, 380
MwoI GCNNNNNNNGC 2 cut(s) 32, 146
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 2 cut(s) 6, 378
NmuCI GTSAC 2 cut(s) 64, 335
NsiI ATGCAT 1 cut(s) 58
PagI TCATGA 1 cut(s) 409
PkrI GCNGC 4 cut(s) 25, 298, 397, 400
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 6, 378
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SatI GCNGC 4 cut(s) 24, 297, 396, 399
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 212
SinI GGWCC 1 cut(s) 226
Sse9I AATT 2 cut(s) 120, 256
SsiI CCGC 2 cut(s) 319, 344
SspI AATATT 1 cut(s) 46
SspMI CTAG 3 cut(s) 30, 71, 460
StyI CCWWGG 1 cut(s) 229
TaiI ACGT 1 cut(s) 450
TasI AATT 2 cut(s) 120, 256
TatI WGTACW 1 cut(s) 370
TseFI GTSAC 2 cut(s) 64, 335
TseI GCWGC 4 cut(s) 23, 296, 395, 398
Tsp45I GTSAC 2 cut(s) 64, 335
TspDTI ATGAA 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 3 cut(s) 30, 71, 460
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.